Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1619 ATGGCTCTGCTTCTGATAATACCCATTTCCCTCATCACCCTTTTCCTGTGTTACACGCTGTACCATAGGCTAAGGTTCAAGCTCCCTCCTGGTCCACGGCCTTGGCCGGTTGTCGGTAACCTCTACGACATAAAGCCGGTTCGGTTCCGGTGCTTCGCGGAGTGGGCACAATCTTATGGTCCCATCATATCGGTTTGGTTCGGTTCGACGCTAAACGTCATCGTTTCGAACACGGAGTTGGCGAAAGAGGTTTTGAAGGAGCATGATCAGCAACTGGCTGACCGGCACCGGAGCCGGTCGGCAGCGAAGTTCAGCCGAGACGGGAAGGATCTAATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTAAGGAAGGTTTGCACGCTTGAGCTTTTCACCCCTAAGCGTCTTGAGGCGTTGAGGCCCATTAGGGAAGATGAGGTCACGGCCATGGTTGAGTCCATTTACAAGGACTGCACCAGTACTGAAAATTTGGGAAGAGGTGTGTTGGTGAAGAAGTACTTGGGGGCTGTGGCATTCAACAACATCACGAGGTTGGCATTTGGGAAAAGATTTGTGAACTCAGAAGGTGTGATGGACGAGCAAGGACTAGAATTCAAGGCCATTGTGGCAAATGGGTTAAAGCTAGGAGCATCTCTAGCTATGGCCGAGCACATCCCTTGGCTGCGCTGGATGTTCCCACTAGAAGAGGAAGCTTTTGCCAAGCATGGAGCTCGCCGTGACAGACTCACCAGAGCCATCATGGAAGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAACAACATTTTGTAGATGCCCTCCTCACTTTGCAAGAAAAATATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGACATGATCACAGCAGGGATGGACACAACTGCAATCACAGTTGAGTGGGCCATGGCCGAGTTGATAAGAAACCCAAGGGTGCAACAGAAGGCCCAAGAGGAGCTAGACAGGGTCATTGGGCTTGAAAGGGTGATGGCTGAAGCTGACTTCTCAAGCCTGCCTTACCTACAATGTGTGGCCAAGGAGGCACTAAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTTAAAGTTGGTGGCTATGACATTCCCAAAGGGTCCAATGTGCATGTAAATGTGTGGGCAGTGGCACGTGACCCGGCTGTGTGGAAGGATCCGTTGGAGTTCCGACCCGAGAGGTTTCTTGAGGAGGATGTAGACATGAAGGGCCATGACTTTAGGCTACTTCCATTCGGGGCGGGTCGTCGGGTATGCCCGGGTGCACAACTCGGAATCAACTTGGTCACATCCATGTTGGGTCACCTCTTGCATCATTTCTGTTGGACCCCACCTGAAGGAATGAAGCCTGAGGAGATTAACATGGGAGAGAATCCTGGGTTGGTCACATTCATGAGGACCCCACTACAGGCTGTGGCTTCTCCTAGGCTGCCCTCACACTTGTATAAACGTGTCCCTGCTGAGATCTAA 1530 0.519 MALLLIIPISLITLFLCYTLYHRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNTELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLEALRPIREDEVTAMVESIYKDCTSTENLGRGVLVKKYLGAVAFNNITRLAFGKRFVNSEGVMDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMEEHTEARKKSGGAKQHFVDALLTLQEKYDLSEDTIIGLLWDMITAGMDTTAITVEWAMAELIRNPRVQQKAQEELDRVIGLERVMAEADFSSLPYLQCVAKEALRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPAVWKDPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFCWTPPEGMKPEEINMGENPGLVTFMRTPLQAVASPRLPSHLYKRVPAEI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1619 509 Pfam Cytochrome P450 29 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 SUPERFAMILY Cytochrome P450 29 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Ssu4g1619 509 Gene3D Cytochrome P450 22 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PANTHER CYTOCHROME P450 98A3 4 502 - -
Ssu4g1619 509 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 502 - -
Ssu4g1619 509 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1619 509 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1619 Ssu-Chr4 28083769 28088806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1619 5 509 Monolignol Biosynthesis Gene Families AT2G40890 80.990 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1619 K09754 - gmx:100811080 979.933