Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1618 ATGTCAATGGCACACTCCCAGCTAAGCCACTCTCTGGAAAATGGACTGAAAACTGAAGACTCAGAATTCCCTCTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGGTTCTTAGTAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGACGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCATCTCTTGAATCCAGTTACGATAAAGGGTCCACGTTTCGTTTCAAACTAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCCCCTAACTTGGCATATGGGGCAGCAGGGTCTCCTCCATTGATTCCTCCTAATGCAACTCTCATTTTTGACATTGAAATGCTATCTTGGAGTTCCATCAGGGATTTGACTGGCGATGGAGGAATCATGAAAAAGATAATACGAGAGGGAGAAGGATGGGCAACTCCCACAGAGGCTGATGTGGTGCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTTTCTCCAGGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTTTTATCGGCTCAgtcaaaattcaaatagaaCCACTGAGCTAGATGGTTGTCTCCCATCAGATTCTAATTTAAGTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTACAGATGTCACGGGAGATAAGAAGAtactgaaaaaaattaagaaagtggGTGAGGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTGGTATATTTGTGTAAAGGGGAAGATGGTATGATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAGCAGGTGCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAACAGAACAAGCTATGGTGACTGTCGATGCTGAATATTTGTGCGACTATAATGATTCACAGGGAAAcacaaccaataataaagtccTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAGCCATTTTGGAAAATGGACACACAAGAGAAAATAGAAGCTTGTGAGAGAAAGAAGCACGATGGAAATCTGCTGTTCAAGGCTAAAAATTTCAGGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCGTCAAGCTAATACCTTACGTTTATCCTGCAATTTGAACAATGCTGCTTGTAAACTTAAATTGGGGGAGTACATTGAAGCATCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATCAAGGCTCTTTACAGAAGATGCCAATCTTACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTGGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGATATGAAGCTGACATCTTCAGCACAATGCTTTCAAGGATGAGTTAG 1620 0.3963 MSMAHSQLSHSLENGLKTEDSEFPLKEIGNEGLTKRVLSKGVTWQTPFSGDEVEVHFRGQVENGASLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGAAGSPPLIPPNATLIFDIEMLSWSSIRDLTGDGGIMKKIIREGEGWATPTEADVVLVKYEARLENGMLFSRSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFFYRLSQNSNRTTELDGCLPSDSNLSSIKLELVSWKIVTDVTGDKKILKKIKKVGEGFDRPNEGSQVKVVYLCKGEDGMIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKTEQAMVTVDAEYLCDYNDSQGNTTNNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAKNFRRASKKYEKAVKYIEFDHSFNEDEKRQANTLRLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQSYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRYEADIFSTMLSRMS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1618 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 250 362 - -
Ssu4g1618 539 PANTHER PEPTIDYLPROLYL ISOMERASE 364 539 - -
Ssu4g1618 539 PANTHER PEPTIDYLPROLYL ISOMERASE 3 259 - -
Ssu4g1618 539 Gene3D - 3 139 IPR046357 GO:0003755
Ssu4g1618 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Ssu4g1618 539 Gene3D - 258 375 IPR046357 GO:0003755
Ssu4g1618 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Ssu4g1618 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 364 539 - -
Ssu4g1618 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 259 - -
Ssu4g1618 539 PANTHER PEPTIDYLPROLYL ISOMERASE 250 362 - -
Ssu4g1618 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Ssu4g1618 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Ssu4g1618 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 222 IPR001179 GO:0003755
Ssu4g1618 539 Gene3D - 140 257 IPR046357 GO:0003755
Ssu4g1618 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Ssu4g1618 539 SUPERFAMILY TPR-like 380 534 IPR011990 GO:0005515
Ssu4g1618 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Ssu4g1618 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Ssu4g1618 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Ssu4g1618 539 SUPERFAMILY FKBP-like 28 138 - -
Ssu4g1618 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Ssu4g1618 539 Gene3D Tetratricopeptide repeat domain 376 533 IPR011990 GO:0005515
Ssu4g1618 539 SUPERFAMILY FKBP-like 143 220 - -
Ssu4g1618 539 SUPERFAMILY FKBP-like 254 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1618 Ssu-Chr4 28052540 28058807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1618 27 538 Calmodulin-binding Proteins AT5G48570 53.372 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1618 - - gmx:100785412 959.133