Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g1618 | ATGTCAATGGCACACTCCCAGCTAAGCCACTCTCTGGAAAATGGACTGAAAACTGAAGACTCAGAATTCCCTCTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGGTTCTTAGTAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGACGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCATCTCTTGAATCCAGTTACGATAAAGGGTCCACGTTTCGTTTCAAACTAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCCCCTAACTTGGCATATGGGGCAGCAGGGTCTCCTCCATTGATTCCTCCTAATGCAACTCTCATTTTTGACATTGAAATGCTATCTTGGAGTTCCATCAGGGATTTGACTGGCGATGGAGGAATCATGAAAAAGATAATACGAGAGGGAGAAGGATGGGCAACTCCCACAGAGGCTGATGTGGTGCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTTTCTCCAGGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTTTTATCGGCTCAgtcaaaattcaaatagaaCCACTGAGCTAGATGGTTGTCTCCCATCAGATTCTAATTTAAGTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTACAGATGTCACGGGAGATAAGAAGAtactgaaaaaaattaagaaagtggGTGAGGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTGGTATATTTGTGTAAAGGGGAAGATGGTATGATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAGCAGGTGCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAACAGAACAAGCTATGGTGACTGTCGATGCTGAATATTTGTGCGACTATAATGATTCACAGGGAAAcacaaccaataataaagtccTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAGCCATTTTGGAAAATGGACACACAAGAGAAAATAGAAGCTTGTGAGAGAAAGAAGCACGATGGAAATCTGCTGTTCAAGGCTAAAAATTTCAGGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCGTCAAGCTAATACCTTACGTTTATCCTGCAATTTGAACAATGCTGCTTGTAAACTTAAATTGGGGGAGTACATTGAAGCATCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATCAAGGCTCTTTACAGAAGATGCCAATCTTACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTGGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGATATGAAGCTGACATCTTCAGCACAATGCTTTCAAGGATGAGTTAG | 1620 | 0.3963 | MSMAHSQLSHSLENGLKTEDSEFPLKEIGNEGLTKRVLSKGVTWQTPFSGDEVEVHFRGQVENGASLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGAAGSPPLIPPNATLIFDIEMLSWSSIRDLTGDGGIMKKIIREGEGWATPTEADVVLVKYEARLENGMLFSRSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFFYRLSQNSNRTTELDGCLPSDSNLSSIKLELVSWKIVTDVTGDKKILKKIKKVGEGFDRPNEGSQVKVVYLCKGEDGMIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKTEQAMVTVDAEYLCDYNDSQGNTTNNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAKNFRRASKKYEKAVKYIEFDHSFNEDEKRQANTLRLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQSYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRYEADIFSTMLSRMS | 539 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g1618 | 539 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 250 | 362 | - | - | |
Ssu4g1618 | 539 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 364 | 539 | - | - | |
Ssu4g1618 | 539 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 3 | 259 | - | - | |
Ssu4g1618 | 539 | Gene3D | - | 3 | 139 | IPR046357 | GO:0003755 | |
Ssu4g1618 | 539 | ProSiteProfiles | TPR repeat profile. | 473 | 506 | IPR019734 | GO:0005515 | |
Ssu4g1618 | 539 | Gene3D | - | 258 | 375 | IPR046357 | GO:0003755 | |
Ssu4g1618 | 539 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 50 | 138 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 364 | 539 | - | - | |
Ssu4g1618 | 539 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 3 | 259 | - | - | |
Ssu4g1618 | 539 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 250 | 362 | - | - | |
Ssu4g1618 | 539 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 281 | 370 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 47 | 135 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 162 | 222 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | Gene3D | - | 140 | 257 | IPR046357 | GO:0003755 | |
Ssu4g1618 | 539 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 166 | 246 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | SUPERFAMILY | TPR-like | 380 | 534 | IPR011990 | GO:0005515 | |
Ssu4g1618 | 539 | SMART | tpr_5 | 473 | 506 | IPR019734 | GO:0005515 | |
Ssu4g1618 | 539 | SMART | tpr_5 | 390 | 423 | IPR019734 | GO:0005515 | |
Ssu4g1618 | 539 | SMART | tpr_5 | 439 | 472 | IPR019734 | GO:0005515 | |
Ssu4g1618 | 539 | SUPERFAMILY | FKBP-like | 28 | 138 | - | - | |
Ssu4g1618 | 539 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 285 | 373 | IPR001179 | GO:0003755 | |
Ssu4g1618 | 539 | Gene3D | Tetratricopeptide repeat domain | 376 | 533 | IPR011990 | GO:0005515 | |
Ssu4g1618 | 539 | SUPERFAMILY | FKBP-like | 143 | 220 | - | - | |
Ssu4g1618 | 539 | SUPERFAMILY | FKBP-like | 254 | 392 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g1618 | Ssu-Chr4 | 28052540 | 28058807 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g1618 | 27 | 538 | Calmodulin-binding Proteins | AT5G48570 | 53.372 | 0.0 | 558 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g1618 | - | - | gmx:100785412 | 959.133 |