Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1617 atggaaGGAGATGGGTTTTGTGGGAGTTTTCTTCAGAGGTGCAAGCCTTACATAGCTATGATTTCTCTGCAATTTGGGTTCGCGGGTATGAACATAATCACCAAGGTCTCCCTCAACCGTGGGATGAGCCACTATGTGCTCGTGGTTTATAGACATGCTTTTGCTACCGCAGCTATTGCTCCCTTTGCTCTTGTTCTCGAGAGGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGACCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACGTGCTCCCTGCAATGACATTTGTGATGGCAGCTATTTGCAGGATGGAGAAGGTGCACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTACTAACAGTTGCTGGGGCCATGTTGATGACACTGTACAAAGGGCAAGTCATCAATTTCTTGGGGTCTAAGTACATGCATCACCCCAGAAACTATGTGCCTGAAAACACCACTGACTCGGGTGAAAAGGATTGGTTTAAGGGTTCCATTCTGCTCATAATTGCCACCCTTTCTTGGGCTTCTTTCTTCATCCTTCAGGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGCTCCTTGGGTACACTGCAGTCAATTGCAGTTACCTTTATCATGGAGCACAAGACATCTGTTTGGACCATTGGCTGGGATATGAACCTTCTTGCCGCAGCCTATGCTGGAATAATATCATCAGGTATTACCTACTATGTTCAGGGGATTGTCATGCAAAAAAAAGGGCCTGTTTTCGTAACCGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTGCTTTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCGTTGGAGCTATTGTCATAGTAATGGGACTTTACTCGGTTCTATGGGGCAAATACAAGGAGAACAAAGAGAAAGAAGCAGAGATAAGCAGTGAGGTAATGAAGTGCTGTTCAGAAAATGGGAGGATGGAGACTGTGGTAGAAGAGGCTGAGACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCCAATGAGTTAAGGGTAGCCATTAGTGTTCCAAAAGTTTGA 1179 0.4461 MEGDGFCGSFLQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNVLPAMTFVMAAICRMEKVHMRKVRCQAKVIGTVLTVAGAMLMTLYKGQVINFLGSKYMHHPRNYVPENTTDSGEKDWFKGSILLIIATLSWASFFILQAVTLRKYPAQLSLTALVCSLGTLQSIAVTFIMEHKTSVWTIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVVGAIVIVMGLYSVLWGKYKENKEKEAEISSEVMKCCSENGRMETVVEEAETNNDIEMQKGEASNELRVAISVPKV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1617 392 PANTHER WAT1-RELATED PROTEIN 10 367 - -
Ssu4g1617 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 336 - -
Ssu4g1617 392 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Ssu4g1617 392 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020|GO:0016021
Ssu4g1617 392 PANTHER WAT1-RELATED PROTEIN 10 367 IPR030184 GO:0016021|GO:0022857
Ssu4g1617 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1617 Ssu-Chr4 28031979 28034145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1617 1 390 Nodulin-like Gene Family AT5G07050 60.759 1.44e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1617 - - gmx:100793545 716.457