Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1607 ATGAGGGAAGAGGATTCGAATTGGTTTTCGCGATGGGAAGAGGAGCTCCCACCGCCAGACGAACTCATGCCCCTATCGCAAACCCTAATCACGCCCGATCTAGCCATGGCCTTCGACATCCGAAACACGCACCCCACCAACCCCAACACcgcacaacaacaacagcagcagcagcagcaacaacaacaacaaccgcAACCGCAACCCTCGAACCCTTCCTCCCTCCCCAACCCGCAGCCCACCTCCGCCGAGTTCGCCGACTCCGGCGAACTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCGCGGACCCTCAAGCGGCCCCGCCTCGTGTGGACCCCGCAGCTCCACAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATCAAAAACGCCGTCCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGCGAGAACGTCGCCAGTCACTTGCAGAAGTACCGCCTCTACCTCAAACGCATGCAGGGGATTTCCACCGCCGGGGCCGGCGGCCCCGGCGGCGGAGCCTCGGGCGCCGTGGCGGACCCCGCCACGGACCACTTGTTCGCCAGCTCGCCGGTCCCGGCGCACTTCCTGCACCCGGCCGCGAGGTCGAATTCGGACCACTTCCTGCCGTTCGTGCCGGTGCCGGcgctccaccaccaccaccaccagcaGCAGATGGCGGCGGCGCAGTTTCACCGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAATCCGTTCATGTCCAGGCCGGGTCTTCAGAGGATggggggtggtggtggtggtggtccTGTGCACAACCACCACCCTGTGTCTGGATATGTGGAGGACATGGAATCTGCTAATGCTGCCTCTGCAGGTAGAAAGGTTCTTACTCTGTTCCCAACTGGGgatgattga 924 0.5736 MREEDSNWFSRWEEELPPPDELMPLSQTLITPDLAMAFDIRNTHPTNPNTAQQQQQQQQQQQQQPQPQPSNPSSLPNPQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISTAGAGGPGGGASGAVADPATDHLFASSPVPAHFLHPAARSNSDHFLPFVPVPALHHHHHQQQMAAAQFHRQVGHFGSPPNGHFENPFMSRPGLQRMGGGGGGGPVHNHHPVSGYVEDMESANAASAGRKVLTLFPTGDD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1607 307 MobiDBLite consensus disorder prediction 42 68 - -
Ssu4g1607 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Ssu4g1607 307 MobiDBLite consensus disorder prediction 240 280 - -
Ssu4g1607 307 MobiDBLite consensus disorder prediction 1 105 - -
Ssu4g1607 307 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 IPR044841 GO:0003700|GO:0006355
Ssu4g1607 307 SUPERFAMILY Homeodomain-like 103 163 IPR009057 -
Ssu4g1607 307 MobiDBLite consensus disorder prediction 1 18 - -
Ssu4g1607 307 Pfam Myb-like DNA-binding domain 110 158 IPR001005 -
Ssu4g1607 307 Gene3D - 103 165 - -
Ssu4g1607 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 162 IPR017930 -
Ssu4g1607 307 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1607 Ssu-Chr4 27656048 27656971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1607 1 307 G2-like Transcription Factor Family AT3G10760 57.020 7.93e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g1607 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1607 - - gmx:100815363 478.789