Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1606 ATGCCTTCGAGTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAGGCGCAGCAGCACTCATCATTGTCGTACAGTGCCACCACGCCTTCCAAAACGCACCAACCACAGCACCTGACCTCTCTATGCGAGGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCAAAATCCCCGTTCGTCGGCGAAATCACCCATGTCGACGACACTGTTCCCGTTTCTAAGGGCTTCAGAATTTGGCTCTCCGAAACTTCCATGCTTTCCTCCTCTCTTTCCCCCGGTTCCATTGTCTCGGTGTCTATTCCATCTTCGGGGGAGAAAAGTTCGCAATTGCATAGCTTTCCCCTCGCGTCGTTAGCTAATGAATGCGTCAAATTCTATGGATTGGAAATTGGCAAGGCATGTGATGATGATGCGGGAAACTACTTTGTTCTTGCAACGGTGTTTCCTTCTAGTAAGgtTTTGAAGAATGGAGTACGTCTGTCTTCAAACCTTTATTATACCATGGGATGTCCTCCTTTGGGCGCAAGTGTGTTTGTTCATCCAATACAGAAACAATTCTTGTCTAGTCTTGCGAATGGGAGCAATGAACAGCTTTCTACAGAAAATAATTGTCTGTCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGGCAACCATTGAAGTTTAATAACTTTCCCTCATTGAATGTGTCTAAGGGGAAATCCTGTGTACAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCTTATGGATCAAAGTTTACTAATGCTAGTGGGCTGTCTTCTTCGTTATTTGAAGATTCAGTGTCTAGTGTACCCAATCAAAAAAGTCAACCACTGATTTCATTTGATGTTAGCTTAGCATTAGGGGATGAAAGTTCTAAAAAATTACTACAGACGTGTGCAACTTCATGGTTATATTCTCGATCTTTACTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGTTGTGCTTTTTCCAAGTGATAGGAGCTAAGAAGGAGCCAGTTACCAGATCTGATCATTATCCATCAAATGGAAGCAGTGATTTATATCCTGATATTGCAGATAGTGTAAATCAGGCTTTCACTGTTAATTATGAAACAAAGGTATTTTTATCTCTGCCATCAAATGAAGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCTAATGCTAGTTTACATGATAATATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTTTAAAGGACATAATTTCTTCCTCAGTGAACAATGCTTTATCAAGTTTTGGTTTAAGAATTACAAGAGGTGTCCTTCTTCATGGCCCTCCTGGTACAGGAAAGACTTCCCTGGCTCGATTATGTGCCCATGATGTTGGAATCAATTTTTTCCCCATAAATGGACCTGAAATTGTTACCCAATATTATGGTGAAAGTGAGCAAGCATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTACACCGGCTGtgGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGACAGAGGGGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTGAATCTGATGGATGGAATTAGTAGAACTGAAGGATTACTTGTAATTGCTGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGAAGACCAGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAGCGTTCAGATATTTTGCTAACTCTTCTTAGTGAAATGGATCACTCACTCTCTGAGTTACAAATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATTTAGCTGCCCTTTGCAATGAGGCAGCCTTAATTTGTCTACGACATTATGCTAATTTTAAGAAGACTCATGATTCTTATTCTGATAATGGAACAGAGCAACCCGCTCTGATGAATGGTGCAACAAACTCAATAGATCATTCAGGTGTTGCAACTTCATCTGTTTCAGATATGTCAGTTGCCTCCAGTCTTGTATTACCTTCCTGCATGATGGGAACGACTTCTGAAACTATGGAAATAATATCTAATAGTGGTGAAGATGAggagattttgaaaataagtttcGAAGATTTTCGGAAGGCTAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATTCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGTCAAAAGGAGGTTAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTCAACCGGATTGGGACTCGCCCTCCTACGGGTGTATTGATGTTTGGACCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGTCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCTAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGATAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTGCATCAAAGAGTTAACGTCACTATCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGACCAgGTCGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATTCCATGTAGTTCTGATGTTAGCCTTAAAGCACTAGCTAAACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGTCAATCAAACAGATCCAGCCATCAGAAGTCCAGTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACTGCTGTGATATAAAGGATGAATTCAATCATATGCAGTGCGACCGTAGATCTACTCCATTTAACATTTGGAAGTTCATAAAATCTTGCGCATTGTTACTCTATCAGATTCCAGCTGCCATCTTCAATTTTAGAACTGCTCGAAGTAGTTAA 3165 0.4111 MPSSSNSKQKKKQSKAQQHSSLSYSATTPSKTHQPQHLTSLCEEASRKFPSLIAKSPFVGEITHVDDTVPVSKGFRIWLSETSMLSSSLSPGSIVSVSIPSSGEKSSQLHSFPLASLANECVKFYGLEIGKACDDDAGNYFVLATVFPSSKVLKNGVRLSSNLYYTMGCPPLGASVFVHPIQKQFLSSLANGSNEQLSTENNCLSIYNCKELYLQLVPSKNGQPLKFNNFPSLNVSKGKSCVQSENDIVASPATPSYGSKFTNASGLSSSLFEDSVSSVPNQKSQPLISFDVSLALGDESSKKLLQTCATSWLYSRSLLLGNLVNVPMFSELCFFQVIGAKKEPVTRSDHYPSNGSSDLYPDIADSVNQAFTVNYETKVFLSLPSNEASEEPIQRDIPCVKLEHKVANASLHDNISKLGGLSKEYTLLKDIISSSVNNALSSFGLRITRGVLLHGPPGTGKTSLARLCAHDVGINFFPINGPEIVTQYYGESEQALHEVFDSAIQATPAVVFIDELDAIAPARKDRGEELSQRLVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLSEMDHSLSELQIEHLATVTHGFVGADLAALCNEAALICLRHYANFKKTHDSYSDNGTEQPALMNGATNSIDHSGVATSSVSDMSVASSLVLPSCMMGTTSETMEIISNSGEDEEILKISFEDFRKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFNRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTIIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCSSDVSLKALAKLTDGCTGADISLICREAAVAAIEESLDASVITMKHLKMSIKQIQPSEVQSYQKLSTKFQRAVHCCDIKDEFNHMQCDRRSTPFNIWKFIKSCALLLYQIPAAIFNFRTARSS 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1606 1054 Pfam ATPase family associated with various cellular activities (AAA) 780 911 IPR003959 GO:0005524|GO:0016887
Ssu4g1606 1054 Pfam ATPase family associated with various cellular activities (AAA) 451 580 IPR003959 GO:0005524|GO:0016887
Ssu4g1606 1054 Pfam AAA+ lid domain 934 979 IPR041569 -
Ssu4g1606 1054 Pfam AAA+ lid domain 606 637 IPR041569 -
Ssu4g1606 1054 SMART AAA_5 776 914 IPR003593 -
Ssu4g1606 1054 SMART AAA_5 447 583 IPR003593 -
Ssu4g1606 1054 MobiDBLite consensus disorder prediction 1 38 - -
Ssu4g1606 1054 CDD AAA 746 912 - -
Ssu4g1606 1054 ProSitePatterns AAA-protein family signature. 882 900 IPR003960 GO:0005524|GO:0016887
Ssu4g1606 1054 Gene3D - 740 912 IPR027417 -
Ssu4g1606 1054 PANTHER AAA-FAMILY ATPASE 44 1010 - -
Ssu4g1606 1054 Gene3D - 400 580 IPR027417 -
Ssu4g1606 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 992 IPR027417 -
Ssu4g1606 1054 Gene3D - 913 990 - -
Ssu4g1606 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 640 IPR027417 -
Ssu4g1606 1054 Gene3D - 582 739 - -
Ssu4g1606 1054 CDD AAA 449 580 - -
Ssu4g1606 1054 PANTHER - 44 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1606 Ssu-Chr4 27643615 27652791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1606 10 1040 Calmodulin-binding Proteins AT3G56690 55.827 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1606 - - gmx:100788600 1713.74