Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1605 ATGGCATCAAGACCCACCGTTCAACAACAGGCCAGAGGTGAAGCAGTAGTGGAGAGAGGGAAACAGCAGAAGAAGAAGGGTGTAGCGGAGGGAAGGAACCGCAGAGCACTTGGTGATATTGGGAATTTGGCCAATGTAAGAGGAGTTGAGGGAAAAGCTTGTGCTAATGTGGCTGGACCTCCTCCTGTTGCTAATGCAGTTGCAGTGGCCAAAATAGTGGCACCCAAACCGGGTCAGAAGAAAGTCAATGTAAAACCAAAGCCCGAAGAACCCATTTACACTGAAGCTAGCCCAGATAAGGAGATCCAGAAAGACAAGGAAAAGGAAGGAGATGCCAACTCCAAGAACAAATCATATACATCAGTGCTCACAGCTCGAAGCAAGGCAGCGTGCGGCATAACTAAAAAACTCAAGGAGCTGATTATTGACATCGATGCTGGTGATGTTGACAATGAGCTTGCTGCTGTGGAGTATATTGATGACATTTACAAATTCTATAAGCTTGTTGAGAACGAGAGCCGCCCCCATGACTACATAGACTCACAACCTGAGATAAATGAGAGGGTGAGAGCTATAGTGGTTGATTGGCTGATGAGTGTCCACGCCACATTTAAGCTTTCTCTTGAGACCCTTTACTTGACCATCAATATAATGGATCGGTTCCTAGCAGTTAAGACTGTTCCAGGAAGAGAACTGCAATTGGTAGGAATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCCCCTGAGGTAAATGACTTTGTCTGCATCTCAGATATTTACATTCGTGAACAGATACTGGTTATGGAGAAAATCATATTGGAGAAGCTGGAATGGACTTTGACTGTGCCAACACCTTTGGTTTTCCTTGTTCGCTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGGCCCATTTTCTGTCTGAGTTGGGAATGATGCACTATGCCACCTTAATGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTGAATAAGTCTCCCTTTTGGAATGAGACACTTCAGCTGCACACGGGTTATTCACAAGAACAACTTATGGATTGTGCTAGATTATTGGTGAGCTTCCACTCTACAGTTGGGAATGAAAAGCTTGAGGCTGTGTACAAAAAGTATTCTGATCCACAGAAAGGAGCAGTTGCTGTGCTCCCACCAGCTAAATATCTTCTGCCTGAAGGGGAGAAAAGTTCGCAATTGCATAACTTCCCCCTCGCGTCGTTAGCTAATGAATGTGTCAATATGGATTGGAATTTAGAAATTGGCAAGCCATTCAATGACGATGCGGGAAACTACTTTGTCCTTGCAACGGTGTTTGCTTCTAGTAAGGTTTTCTCTGTTAGTTGTGAAACAAAGGCACTTTTTTTATCTCTGCCATCAAGTGCAACATCTAAAGAGCTAATTCAAAGGGATATACCTTATGTGAAACTAGAACACAAAGTTGTTAATGCCAACTTACATGATAATATCTCTAAATTGGGTGGTTTATCCAAAGAATATGCACTTTTAAAGGACATAATTTCTTCATTAGTGAACGATGCTTTATCAAGAGAGCGAGagagtgtgagagagagagatagagggAAAGAGGTTCTATCCAGATTTGTTCGTCAAACTTTGATTTCAATTCAAGACCAAAGAAGAATTTCCCAAATGGCATCAAGAGCAATTGTTCAACAACAGGCCAGAGGTGAAGCAGTAGTAGGGGGAGGGAAACAGCAGAAGAAGAATGGTGTAGCGGATGGAAGGAACCGCAAGGCATTAGGAGATATTGGGAATTTGGCCAATGCAAGAGGACTTGAGGTCAAACCCCAGTTACCCCATCGCCCCATCACaagGAGTTTTGGTGCCCAACTACTTGCCAATGCGCAAGCAGCAGCAGCTGCTGAAAACAACAAGAAACAGGCTTGTGCCAATGTAGCGGGACCTCCACCTGTTGCTCCTAATGCAGTTGCAGTGGCCAAAAGAGTGGCCCCCAAACCGGGTCAGAAGAAAGTCACTGTAAAACCAAAGCCTGAGGAGGTCATTGACATTGAAACTAGCCCAGAGAAGGAGGTCCAGAAAgacaagaaaaaggaaggagatGCCAACTCCAAGAAGAAATCACACACTCTTACATCAGTGCTCACAGCTCGAAGCAAGGCAGCATGCGGCATAACTAACAAACCGAAGGAGCAGATTATTGACATTGATGCTGGTGATGTTGACAATGAGCTTGCTGCTGTAGAGTATATTGATGAGATTTACAAGTTTTACAAGCTTGTTGAGAACGAGAGCCGTCCTCATGACTATATAGACTCGCAACCTGAGATAAATGAGAGGATGAGAGCTATTCTGGTTGATTGGCTGATAGATGTCCACACCAAATTTGACCTTTCTCTTGAGACCCTTTACTTGACCATCAATATCATTGATCGGTTCCTGGCTGTCAAGACTGTTCCAAGGAGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCCCTGAGGTATATATTTGTTAATGACTTTGTCTGCCTCTCAGATAGGGCTTACACTCATGAACAGATACTGGTCATGGAGAAAATCATTCTGGGCAAGCTGGAGTGGACTTTGACTGTGCCTACACCTTTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGGCCCATTTTCTGTCTGAGTTGGGAATGATGAATTATGCCACCTTAATGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGGTGCACTCTGAATAAGTCTCCCCTTTGGAATGACACACTTAAGCTGCACACGGGTTACTCACAGGAACAACTtatGGATTGTGCTAGACTGTTGGTGAGCTTCCACTCCACGGTTGGGAATGGAAAGCTTAAGGTTGTGTACAGGAGGTATTCTGATCCTCAGAAAGGAGCTGTTGCTGTACTCCCACCAGCTAAATATCTTCTGCAAGAAGGTTCTGCCTCCCAATAG 3069 0.4386 MASRPTVQQQARGEAVVERGKQQKKKGVAEGRNRRALGDIGNLANVRGVEGKACANVAGPPPVANAVAVAKIVAPKPGQKKVNVKPKPEEPIYTEASPDKEIQKDKEKEGDANSKNKSYTSVLTARSKAACGITKKLKELIIDIDAGDVDNELAAVEYIDDIYKFYKLVENESRPHDYIDSQPEINERVRAIVVDWLMSVHATFKLSLETLYLTINIMDRFLAVKTVPGRELQLVGISAMLMASKYEEIWPPEVNDFVCISDIYIREQILVMEKIILEKLEWTLTVPTPLVFLVRFIKASVPDQELENMAHFLSELGMMHYATLMYCPSMVAASAVFAARCTLNKSPFWNETLQLHTGYSQEQLMDCARLLVSFHSTVGNEKLEAVYKKYSDPQKGAVAVLPPAKYLLPEGEKSSQLHNFPLASLANECVNMDWNLEIGKPFNDDAGNYFVLATVFASSKVFSVSCETKALFLSLPSSATSKELIQRDIPYVKLEHKVVNANLHDNISKLGGLSKEYALLKDIISSLVNDALSRERESVRERDRGKEVLSRFVRQTLISIQDQRRISQMASRAIVQQQARGEAVVGGGKQQKKNGVADGRNRKALGDIGNLANARGLEVKPQLPHRPITRSFGAQLLANAQAAAAAENNKKQACANVAGPPPVAPNAVAVAKRVAPKPGQKKVTVKPKPEEVIDIETSPEKEVQKDKKKEGDANSKKKSHTLTSVLTARSKAACGITNKPKEQIIDIDAGDVDNELAAVEYIDEIYKFYKLVENESRPHDYIDSQPEINERMRAILVDWLIDVHTKFDLSLETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPLRYIFVNDFVCLSDRAYTHEQILVMEKIILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMAHFLSELGMMNYATLMYCPSMVAASAVFAARCTLNKSPLWNDTLKLHTGYSQEQLMDCARLLVSFHSTVGNGKLKVVYRRYSDPQKGAVAVLPPAKYLLQEGSASQ 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1605 1022 CDD CYCLIN 892 979 IPR013763 -
Ssu4g1605 1022 CDD CYCLIN 285 372 IPR013763 -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g1605 1022 ProSitePatterns Cyclins signature. 793 824 IPR006671 -
Ssu4g1605 1022 SMART Cyclin_C_2 287 404 IPR004367 -
Ssu4g1605 1022 SMART Cyclin_C_2 894 1011 IPR004367 -
Ssu4g1605 1022 PANTHER CYCLINS 53 423 IPR039361 -
Ssu4g1605 1022 SUPERFAMILY Cyclin-like 286 406 IPR036915 -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 17 33 - -
Ssu4g1605 1022 Gene3D - 778 892 - -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 683 717 - -
Ssu4g1605 1022 Gene3D - 280 409 - -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 82 114 - -
Ssu4g1605 1022 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 53 423 - -
Ssu4g1605 1022 CDD CYCLIN 792 884 IPR013763 -
Ssu4g1605 1022 Pfam Cyclin, N-terminal domain 161 284 IPR006671 -
Ssu4g1605 1022 Pfam Cyclin, N-terminal domain 764 891 IPR006671 -
Ssu4g1605 1022 Gene3D - 175 279 - -
Ssu4g1605 1022 SUPERFAMILY Cyclin-like 150 284 IPR036915 -
Ssu4g1605 1022 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 589 1016 - -
Ssu4g1605 1022 ProSitePatterns Cyclins signature. 190 221 IPR006671 -
Ssu4g1605 1022 Gene3D - 764 1006 - -
Ssu4g1605 1022 SUPERFAMILY Cyclin-like 753 891 IPR036915 -
Ssu4g1605 1022 SUPERFAMILY Cyclin-like 893 1013 IPR036915 -
Ssu4g1605 1022 CDD CYCLIN 190 277 IPR013763 -
Ssu4g1605 1022 Pfam Cyclin, C-terminal domain 894 1010 IPR004367 -
Ssu4g1605 1022 Pfam Cyclin, C-terminal domain 287 403 IPR004367 -
Ssu4g1605 1022 PANTHER CYCLINS 589 1016 IPR039361 -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 79 116 - -
Ssu4g1605 1022 SMART cyclin_7 898 980 IPR013763 -
Ssu4g1605 1022 SMART cyclin_7 798 885 IPR013763 -
Ssu4g1605 1022 SMART cyclin_7 195 278 IPR013763 -
Ssu4g1605 1022 SMART cyclin_7 291 373 IPR013763 -
Ssu4g1605 1022 MobiDBLite consensus disorder prediction 674 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1605 Ssu-Chr4 27626547 27642059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1605 1 414 Core Cell Cycle Gene Families AT4G37490 51.376 8.87e-129 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1605 K21777 - gmx:547919 731.48