Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1601 ATGAGGATGAAGTCGAGGTCACTAGATGAGTGGAGGAATTACTTTGGGTCAGCGAATTCGGATATATTTGAGATAATTGAGCATGCCATAATTGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAGGAGGGACGGGATTGCGGAGAGGTTGTTCTCTTGCAGGTTAACTCGGTGTTTGGGGTGTGACCGTGTGGAGTTGGCTGTGGCTGGGGATGGTAAAGAGCAACAtcatgatggtgatgatgatgatgatgatggggGTTGCAAgagtgggtttgagagagaaGAGGCAGGGGCGAGCAAAGAGAGTAAGGTCAATGGTTGTGGAGATGGGGATGGAGATGTGAACCGTGTTAGCAACTATAGCTTTGGGGAAGCTGAGGCATTGACTGATGAGATTGAAGAGGAGTCTCAGTATGTTGGGGAGATTTTGAGGATCAGGGAGGTTCTGCATAACCGTCAAGATGAGTCTGAGTCTGTGTTGTTTGATTCACTGAGGAGGCTTCAGCTGATGGAACTCACTGTGGATTGTCTAAAGGCAACTGAGATTGGCAAGGCTGTCAACCCTCTCCGAAAGCATGGATCAAAGGATATTCGTCAACTTGCACGGACTCTCATCGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGGCCACTACTACGACAGCTATTGCAGGTTCAGAAGGCACACCAGATTCAGTAAATCCATCAGTTGTTGacgatgatgaagaagaagaagaagaagaagaaggactTCCATCGCCTCCTATGGATGAAGGGGCTTTCTTTGTAACTCAAACTGGTTCAATAGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGGCAATTCAACAAGAACCGTGAAAATGGCAGAAAGCCAGCTTCAGACAGTCAAGTTATAGACAGGAGGAAATTGCAGGCTTCCCATGAGCCAGCAATCACTACCAGGGAGGTTAAGAGTCagcaaccaaagaaaaatgaggCTGCTGTGAGGCCAAATAAACCAGTAACCGCTGATTCTGGCCCTGGCAGACCTCCAAAATCAAATATGCAGAGAAAAAGTAATATGGAGCCAATGATACAGCAAAAAATAGAGAACAGTTCAATCACAAAGAGGCCTCCAATTGGTCAGCTAGATAAATCCATGCGTTCAGATGATGCGGCAGTCCAAGTGAAGCTTGAAGCCACTAAGAGGAAACTTCAGGAGAGCTATCAACAAGCTGAAAATGCTAAGAGACAAAGAACAATACAAGTTATGGAAATAAATGATCTCCCCAAGCAAGTTGTCCACCGAAATCCACATTTCAAACCTGGATATCACAATAGGCACTGGGCTAATTCACGAAGATAA 1383 0.4237 MRMKSRSLDEWRNYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAERLFSCRLTRCLGCDRVELAVAGDGKEQHHDGDDDDDDGGCKSGFEREEAGASKESKVNGCGDGDGDVNRVSNYSFGEAEALTDEIEEESQYVGEILRIREVLHNRQDESESVLFDSLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLIDGWKEMVDEWVKATTTTAIAGSEGTPDSVNPSVVDDDEEEEEEEEGLPSPPMDEGAFFVTQTGSIELSQFFDGMDDDGNPRPSGQFNKNRENGRKPASDSQVIDRRKLQASHEPAITTREVKSQQPKKNEAAVRPNKPVTADSGPGRPPKSNMQRKSNMEPMIQQKIENSSITKRPPIGQLDKSMRSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKQVVHRNPHFKPGYHNRHWANSRR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1601 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 459 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 278 398 - -
Ssu4g1601 460 Pfam TFIIS helical bundle-like domain 167 215 IPR017923 -
Ssu4g1601 460 CDD TFIIS_I 144 216 - -
Ssu4g1601 460 SMART TFS2_5 142 217 IPR003617 GO:0005634
Ssu4g1601 460 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 228 IPR035441 -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 240 257 - -
Ssu4g1601 460 Coils Coil 401 428 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 73 113 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 444 460 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 73 103 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 441 460 - -
Ssu4g1601 460 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 141 223 IPR035441 -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 225 264 - -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 358 385 - -
Ssu4g1601 460 ProSiteProfiles TFIIS N-terminal domain profile. 143 218 IPR017923 -
Ssu4g1601 460 MobiDBLite consensus disorder prediction 300 321 - -
Ssu4g1601 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 459 IPR044805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1601 Ssu-Chr4 27499836 27502784 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu4g1601 Med26 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1601 - - gmx:100799367 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1601 4 27499836 27502784 Ssu4g1601 4 27499836 27502784 ECH