Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1600 ATGGATTGGGAAGAAGGTGAGCGAAGTTCAGACTCGTCACCGTCGGAAAAATACCTTCTGGGCTTCACGATGGCCAACATCGTGGGCCTGCAGCACCACTCCGGCAGCATCCGCGGCCGCGCACTGGTGGGCCTGGTCCGCGAGCCCCACAACCCGCACGACCCACACGCCATCCAAGTCCTCAACACCCTCTCCCTCCCCGTCGGCTACATCGAACGCCCCGTTGCCGCCGTCTTGTCCCCCCTCATCGACGCCCGCCTCATCACCGCCGAAGCCATCGTCCCCAACGCCCGCAAAACCCACCGAGTCCCCTGCCAAATCCACCTCTTCGCTCGCCTCCACGACTTTGACGCCGTCAAGCACGCCGTCTCCAGCGCGGGCCTCAAAGTCATCACCGAATCCGACGCCGCCTTCACTCTCTCCGACTCCGTCGCCGTTAAAGAGACCAAAGCGCAGAAGAAGTCGACGTCCGTCGACGCGGTTTTCAAACTAGTCGACCGCAGCCTCGCCAGCAAGAACCGCGTCGTCGGAACCCTGGAGCCTCCGGGGAGCATCGTCAAGTCGGAGCTTCTCCATCACCAGAAGGAGGGTCTCGCGTGGCTCGTTCACCGCGAGAAATCCGAGGACCTGCCACCGTTTTGGGACGAAAAGAATGACAAGTTCGTAAATATCTTAACCGATTATCAAACCTATAAAAGGCCCGACCCTCTGCGAGGTGGCATTCTCGCAGACGAGATGGGCCTAGGAAAGACCTTAACTTTGCTTTCTTTGATCGCTTTTGACAAGAAGAGCCTAATGGGCACCTCTAGGAAGTTGAGAACAGGCAAAAAGGTGGTTGCTTCTGAGAAACAACGCAAAATTGACAGTGAAAGGACCCTTGATGTGGGAACGAGAACAGATGCAACTTTGGTGGTGTGTCCCCCTTCTGTTATGTCCACGTGGATAACGCAATTGGAGGAACACACTGTGCCGGGTGCGTTGAAGACTTACATGTATTATGGGGAAAGAAGGACCAAGAGTGCTGAGGAGCTTAAGATGTATGATTTGGTGTTGACTACTTACTCTACTTTGTCTAGTGAACAGCGTGTGCCGGAGATGCCGGCGAAGAAAATGGAATGGCGGAGAATTGTTTTGGATGAGGCGCACACCATCAAGAATTTCAATGCTCAACAGACTGCGGCAGTTTGCAAGTTGAATGGTCAGTGCAGGTGGGCCGTCACAGGGACACCGATTCAAAGCGGTTGTATTGATTTGTTCTCTATCATGGTCTTTTTGCGGTTTGAACCATTTTCGGTGAGAAGCTATTGGAGAGACTTGGTGCAACGCTCTCTTGATCAGGGCACGGACAAAGGGCTCTTACGTTTGCAGGTTTTGATGGATGCAATTGCTTTGCGAAGAACAAAAGATGTGGCATTGGTGGGGCTGCCACCAAAAACCACCGAGATTTGTTATGTTGAGCTTTCTTTGGAAGAGCGTGAACTGTATGATCGGATGAAAGAGCAAACAAAGACATTGTTGAGTAGCTTTGGCCATGAGGACAGTCTAGTGCCCCATTACTCTGCTGTATTAAGTAGGATTCTAAGACTTCGCCAAATCTGTACTGATTTGAAATTGTGTAAAGATCAGTCGCTACTCCTTACAaatattgaagATGTTTCCAATAACCCTGAATTGCTACAAACATTACTTGGGTTGCTGCAAGATGGGGAAGATTTTGATTGTCCAATTTGTTTATCTCCTCCGATGGATATTGTGATCACATGTTGTGCACACATTTTCTGCCGAGACTGTATTCTGAAAACACTACAAAACAGCAATCCTTGTTGTCCTCTTTGCCGGCACCCCCTCTCAGAGTCTGACTTGTTCTCAGCCCCTCCTGAGTCTTCCAAGGCAGATAGCACTGAACTGTGCTCATCATCAGAAACAGGGTTATCTTCCAAGGTGTCTACTCTGATAAAACTTCTAACAGAATCAAGGGACCAACATCCAGCTGCAAAGTCAGTTGTATTTTCACAATTTCGAAAGCTGCTGCTGTTACTTGAAGAGCCTCTGAATGCAGCTGGATTCAAGACTTTGTGTCTTGACGGGACAATGAATGCTAAACACAGGGCCAAAGTTATTGAGCAATTTCAAGTCGAAGGAAGAGATGGCCCAGTGGTTCTGCTTGCTAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTTACATCTGCCTCTAGAGTGTATTTTATGGAACCATGGTGGAATCATGCTGTTGAGGAACAAGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAGACCGTGAAGGTTGTTCGATTGATAGCTCAAAACAGcattgaagagaaaatattgaTGTTGcaggagaagaagaaacaacTATCCAAGGAACCATCGGGGACAGAATTAAAGGGCATGAACATGAAAGATATATGTTTCCTTTTAGATTACTAG 2451 0.4855 MDWEEGERSSDSSPSEKYLLGFTMANIVGLQHHSGSIRGRALVGLVREPHNPHDPHAIQVLNTLSLPVGYIERPVAAVLSPLIDARLITAEAIVPNARKTHRVPCQIHLFARLHDFDAVKHAVSSAGLKVITESDAAFTLSDSVAVKETKAQKKSTSVDAVFKLVDRSLASKNRVVGTLEPPGSIVKSELLHHQKEGLAWLVHREKSEDLPPFWDEKNDKFVNILTDYQTYKRPDPLRGGILADEMGLGKTLTLLSLIAFDKKSLMGTSRKLRTGKKVVASEKQRKIDSERTLDVGTRTDATLVVCPPSVMSTWITQLEEHTVPGALKTYMYYGERRTKSAEELKMYDLVLTTYSTLSSEQRVPEMPAKKMEWRRIVLDEAHTIKNFNAQQTAAVCKLNGQCRWAVTGTPIQSGCIDLFSIMVFLRFEPFSVRSYWRDLVQRSLDQGTDKGLLRLQVLMDAIALRRTKDVALVGLPPKTTEICYVELSLEERELYDRMKEQTKTLLSSFGHEDSLVPHYSAVLSRILRLRQICTDLKLCKDQSLLLTNIEDVSNNPELLQTLLGLLQDGEDFDCPICLSPPMDIVITCCAHIFCRDCILKTLQNSNPCCPLCRHPLSESDLFSAPPESSKADSTELCSSSETGLSSKVSTLIKLLTESRDQHPAAKSVVFSQFRKLLLLLEEPLNAAGFKTLCLDGTMNAKHRAKVIEQFQVEGRDGPVVLLASLRASSAGINLTSASRVYFMEPWWNHAVEEQAMDRVHRIGQKETVKVVRLIAQNSIEEKILMLQEKKKQLSKEPSGTELKGMNMKDICFLLDY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1600 816 Pfam SNF2-related domain 193 537 IPR000330 GO:0005524|GO:0140658
Ssu4g1600 816 Gene3D - 225 467 IPR038718 -
Ssu4g1600 816 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 428 IPR014001 -
Ssu4g1600 816 ProSiteProfiles Zinc finger RING-type profile. 574 613 IPR001841 -
Ssu4g1600 816 SUPERFAMILY RING/U-box 566 619 - -
Ssu4g1600 816 Pfam Helicase conserved C-terminal domain 647 763 IPR001650 -
Ssu4g1600 816 Pfam HIRAN domain 23 110 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu4g1600 816 SMART ultradead3 186 440 IPR014001 -
Ssu4g1600 816 Gene3D - 476 811 IPR027417 -
Ssu4g1600 816 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 273 801 - -
Ssu4g1600 816 Coils Coil 776 796 - -
Ssu4g1600 816 Gene3D - 11 130 - -
Ssu4g1600 816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 650 808 IPR001650 -
Ssu4g1600 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 801 IPR027417 -
Ssu4g1600 816 ProSitePatterns Zinc finger RING-type signature. 589 598 IPR017907 -
Ssu4g1600 816 SMART ring_2 574 612 IPR001841 -
Ssu4g1600 816 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 13 261 - -
Ssu4g1600 816 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 273 801 - -
Ssu4g1600 816 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 13 261 - -
Ssu4g1600 816 CDD SF2_C_SNF 644 774 - -
Ssu4g1600 816 Pfam Zinc finger, C3HC4 type (RING finger) 571 617 - -
Ssu4g1600 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 627 IPR013083 -
Ssu4g1600 816 SMART helicmild6 678 763 IPR001650 -
Ssu4g1600 816 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu4g1600 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 466 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1600 Ssu-Chr4 27440299 27444194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1600 4 814 RAD5 or RAD16-like Gene Family AT5G05130 55.609 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu4g1600 SNF2_N 6.5e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1600 K15711 - gmx:100791783 1243.8