Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1599 ATGGCATCCAGTTCAATGTCAGCCTCAGGCTCATGGAGTGTTAAGGACAATAAGGCCTTTGAAAAGGCTCTAGCTGTTTATGACAAGGAAACCCCTGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGGAAAACTCCAGAGGAAGTGAAGAGGCACTATGAACTCCTTGTCCAGGATGTTAAGCATATTGAGTCAGGACGAGTGCCATTCCCAAATTACAAGAAAACCGGAGGGTCTGAGGAGGAGAAAAGGATGAGGAATCTGAACCTCCAGTGA 279 0.4731 MASSSMSASGSWSVKDNKAFEKALAVYDKETPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTGGSEEEKRMRNLNLQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1599 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 92 IPR044636 GO:0003700
Ssu4g1599 92 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Ssu4g1599 92 Gene3D - 2 71 - -
Ssu4g1599 92 CDD SANT 18 58 IPR001005 -
Ssu4g1599 92 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 92 - -
Ssu4g1599 92 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Ssu4g1599 92 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Ssu4g1599 92 MobiDBLite consensus disorder prediction 68 92 - -
Ssu4g1599 92 MobiDBLite consensus disorder prediction 77 92 - -
Ssu4g1599 92 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1599 Ssu-Chr4 27419654 27420143 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g1599 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1599 - - gmx:100818368 169.088