Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1598 ATGTTTCCCCAGCCATGGATCTTGATAGCCACAACCATTGCAACTTCACTGCTCATATGCTCACTGGTTAGGTCGTTTCCAGAAGCTGATAAGGTGAAAAGCTTGCCTGACCAGTCACCTGTTTCTTTCCAACAATTTGCTGGCTATGTAGCCGTTGATGACAAGAATCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCAGAAACCAACCCTGCTTCAAAGCCTCTAGTTCTCTGGCTAAATGGAGGGCCTGGCTGCACATCCGTTGGAGTTGGAGCCTTCACGGAACATGGTCCTTTTGTTACAAATCAAGGAGAGGCTATTGTGAAAAATCAGTATAGTTGGAACAAAGGGGCAAACATTTTGTACCTAGAGTCACCAGCAGGTGTTGGATTCTCTTACTCCCtcaatttgtctttttataaaaCACTGAACGATGAGGTTACAGCCCAAGACAGTCTGGTTTTCCTACAGCGCTGGTTTGCCAAGTTCCCGGAATACAAAAATAGAGATTTTTATATAATGGGAGAGAGTTATGGAGGTCACTATGTACCTCAACTTGCTGAACTCATTATTAAGAGTAAAGTGAATTTCAACCTAAAGGGCATAGCAATAGGAAACCCTCTTCTGGATTTTGACACTGATATGAATGCAGTTGATGAATATTACTGGTCTCATGGAATTATTACTGATTATGCTTACAAAATCAGGACCTCTCTATGTAACTCGTCAAGAGTATTAAGAGAATACTTTAGTGGCCAACTTTCCAACGATTGTCTTGTGGCAGCTCGCAAAGTCTCAGAAGAATATTCTTTTACACCTTTCATTGACCAATACTATGTTATTGGTGACAAATGTCTCTCTTACGATGTTTCTCAGGCAGGTTTTCTTAAGGAGATGCTAAATTCAGGAATGTTTCAGTTTAGGAAGTCCCATCATGTGCAGCAAACTGAAGAACCTGACCAGCAAATTGATGAGTGTAATATGAAATATTCAGAGATGTACTTGAACAGGAAAGATGTGCAGAAGGCTCTCCATGCCCGGCTGGTGGGAACTACCAATTATCGTCTGTGCAGCAAGTTTGTACGAACAAATTATGACCCATTGAACAGAGAGATGCCAACAATTAATGTTGTAGGCTTCCTTGTAAAATCAGGTCTTCGAGTCATCGTTTACAGTGGGGATCAAGACTCTGTCATTCCATTCATGGGCACGAGAAGATTGGTTGATAGACTAGCAAAGAAACTTGGACTTAAAACAACCGTGCCTTACAGTGCCTGGTTTGTGGACAAGCAGGTTGGAGGATGGACACAAGTTTATGGCAATCACCTCACGTATGCCACAGTAAGAGGAGCTTCACATGGCACTCCAGCTACTCAACCAACGAgatctttgttttgtttaatgCGTTTCTTCAAGGGAAACCACTCCCTCAAGCATGAAAAATCCAATGCTTAG 1458 0.4129 MFPQPWILIATTIATSLLICSLVRSFPEADKVKSLPDQSPVSFQQFAGYVAVDDKNQRALFYYFVEAETNPASKPLVLWLNGGPGCTSVGVGAFTEHGPFVTNQGEAIVKNQYSWNKGANILYLESPAGVGFSYSLNLSFYKTLNDEVTAQDSLVFLQRWFAKFPEYKNRDFYIMGESYGGHYVPQLAELIIKSKVNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIITDYAYKIRTSLCNSSRVLREYFSGQLSNDCLVAARKVSEEYSFTPFIDQYYVIGDKCLSYDVSQAGFLKEMLNSGMFQFRKSHHVQQTEEPDQQIDECNMKYSEMYLNRKDVQKALHARLVGTTNYRLCSKFVRTNYDPLNREMPTINVVGFLVKSGLRVIVYSGDQDSVIPFMGTRRLVDRLAKKLGLKTTVPYSAWFVDKQVGGWTQVYGNHLTYATVRGASHGTPATQPTRSLFCLMRFFKGNHSLKHEKSNA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1598 485 Gene3D alpha/beta hydrolase 24 484 IPR029058 -
Ssu4g1598 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 474 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Ssu4g1598 485 SUPERFAMILY alpha/beta-Hydrolases 22 478 IPR029058 -
Ssu4g1598 485 Pfam Serine carboxypeptidase 38 473 IPR001563 GO:0004185|GO:0006508
Ssu4g1598 485 PANTHER CARBOXYPEPTIDASE 6 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1598 Ssu-Chr4 27373626 27377352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1598 332 474 Calmodulin-binding Proteins AT2G22960 24.658 5.10e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1598 K16297 - gmx:100819443 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1598 4 27373626 27377352 Ssu4g1598 4 27373626 27377352 ECH