Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1596 ATGAACATGCTGCCTCTGTCGTTTGCTATGATTGCAACAATAGTTATTGTCCTTGCACAAACACTTGCGGGGGTGAGTTCACTTCCTGAAGCTGATAAAATAAGCAATTTACCGGGACAGCCACAGGTCAAATTTCAGCAATATTCAGGTTACATTACCGTGGATGACCAACATCAGAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAGGAAGACCCTGCTTCCAAGCCATTAGTCCTCTGGTTGAATGGAGGGCCTGGTTGCTCATCGATTGGAGTTGGAGCTTTTGCTGAGCATGGCCCTTTCAGAGCAAGTGACAACAATATTCTGGAGAAAAATGATTATAGTTGGAACAAAGAGGCTAATGTGCTATACTTGGAGTCACCAGCTGGTGTTGGATTCTCTTACTCCAGCAATAGATCTTTCTATGACATAGTGACCGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTACAGCGCTGGTTCATTAAATTCCCTGAATACTCTAATAACGACTTCTTCATTACCGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTCGCACAACTTATTGTTCAAACCAAGACCAAGTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTCTGGAGTTTAATACTGATTTCAACTCCAGATCTGAGTTCTTTTGGTCCCACGGACTGATATCAGATGCCACCTACGAAGACTTAACTAGAGTCTGCAACTATTCCTCAATTAGGAGACTAATTAATAATGGGAATCTTAGAGGCGTTTGTGAAACAGTAAATAACAGATTGTCTACTGAGGTTAGCAACTATATAGATGTATATGATGTCACTCTCGATGTTTGTTTGTCATCAGTGAATCAACAGGCTTATGTGCTGAATCAACTGCAAGACACACAGAAGATAGATGTTTGTGTTGGTGATAAAACAACCACATACTTGAACAGGAAAGAAGTCCAAGAATCTCTGCATGCTAATCTTGTTGGAGTCACCAAATGGTCAACTTGCAGCGAAGTTCTGCATTATGACTATCAGAATCTAGAAATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTGGCATCAGGGTTCTAGTATACAgCGGAGATCAAGATTCAGTGATTCCATTAATGAGTTCGCGATCTCTAGTTAACGGATTAGCCAAGGAAATTAGACTGAATACAACAGTGACCTATAGAGCCTGGTTTGAGGAAAAGCAGGTAGCAGGATGGACACAAGTATATGGGGACGTCTTAGCATATGCCACTATAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCACAGAGATCACTAGTGCTATTTAAAGCATTTCTGGAAGGAAAGCCATTACctagtgtaaaataa 1386 0.4084 MNMLPLSFAMIATIVIVLAQTLAGVSSLPEADKISNLPGQPQVKFQQYSGYITVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSIGVGAFAEHGPFRASDNNILEKNDYSWNKEANVLYLESPAGVGFSYSSNRSFYDIVTDEITARDNLVFLQRWFIKFPEYSNNDFFITGESYGGHYVPQLAQLIVQTKTKFNLKGIAIGNPLLEFNTDFNSRSEFFWSHGLISDATYEDLTRVCNYSSIRRLINNGNLRGVCETVNNRLSTEVSNYIDVYDVTLDVCLSSVNQQAYVLNQLQDTQKIDVCVGDKTTTYLNRKEVQESLHANLVGVTKWSTCSEVLHYDYQNLEIPTIPILGSLVKSGIRVLVYSGDQDSVIPLMSSRSLVNGLAKEIRLNTTVTYRAWFEEKQVAGWTQVYGDVLAYATIRGASHEAPFSQPQRSLVLFKAFLEGKPLPSVK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1596 461 PANTHER CARBOXYPEPTIDASE 8 459 - -
Ssu4g1596 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 459 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 SUPERFAMILY alpha/beta-Hydrolases 35 458 IPR029058 -
Ssu4g1596 461 Pfam Serine carboxypeptidase 38 454 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Ssu4g1596 461 Gene3D - 355 454 - -
Ssu4g1596 461 Gene3D - 309 345 - -
Ssu4g1596 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Ssu4g1596 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Ssu4g1596 461 Gene3D alpha/beta hydrolase 29 288 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1596 Ssu-Chr4 27340198 27343092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1596 317 457 Calmodulin-binding Proteins AT2G22960 31.206 1.58e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1596 K16297 - gmx:100799900 830.861