Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1595 ATGACCATGTCACCTCGTTCATTTACTATGGTTGCAACAATAATAGTTGTGCTTGCACAAACAACTGTGTGGGTGAGTTCACTTCCTGAAGCTGATAAGATAAGCAATTTGCCGGGGCAGCCAAAGGTCAAATTTCAGCAATATTCAGGTTACATTACCGTGGATGACCAACATCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTGAAAAACACCCTACATCCAAGCCATTAGTCCTCTGGTTGAATGGAGGTCCCGGTTGTTCATCTATTGGAGTTGGAGCTTTAGTTGAGCATGGCCCTTTCAAACCGGGTGACAATAATGTTCTTGTGAAAAATCATTATAGTTGGAACAAAGtGGCAAATGTGCTATACTTGGAATCACCGGCTGGTGTCGGATTTTCCTACTCCAGCAATACATCTTTCTATACCATAGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTGCAGCGCTGGTTCACTGAATTCCCTGAGTACTCAAAGAACGACTTCTTCATCACAGGGGAGAGCTATGCagGTCACTATGTTCCACAACTTGCACAACTTATTGTTCAAACCAAGGCCAACTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTATGGAATTTGATACTGATTTGAACTCCAAAGGTGAATTCCTTTGGTCCCACGGATTGATCTCAGATTCAACTTACGATCTCTTCACCAGAGTCTGCAACTACTCCACAATTAGGAGACAAAGTATACATAAGAATCTTAGTAAGGTTTGTGCAACAATAAATAAACTGGTGTTCACTGAGGTTAGCGACTATATAGACCAATATGACGTCACTCTTGATGTGTGTTTGTCATCAGCAAATCAACAGGCTTATGTGCTGAATCAACTGCAAGAGACACAGAAGATAGATGTTTGTGTGGATGATAAAGCTGTCACGTACTTAAACAGGAAAGATGTGCAGGAGGCTCTCCATGCTAAGCTTGTTGGAGTCTCCAAATGGTCAACTTGCAGCCgTGTTCTCCATTATGACCGTCGCAATCTAGAGATACCAACAATATCTATTCTAGGGTCACTTGTTAATTCCAGCATCAGGGTTCTGGTATACAGTGGTGATCAAGATTCAGTTATCCCATTAATGGGATCGCGATCTTTGGTGAATGGATTAGCCAAGGAACTTGGACTTAATACAACAGTGGCCTATAGAGTCTGGTTTGAGGGAAAGCAGGTAGCAGGATGGACACAAGTATACGGGGACATCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCCTTACTCAACCACAGAGATCACTCGTGCTATTTAAAGCATTTCTGAAAGGAAAGCCACTACCAAGTATTGTGTAA 1386 0.4185 MTMSPRSFTMVATIIVVLAQTTVWVSSLPEADKISNLPGQPKVKFQQYSGYITVDDQHQRALFYYFVEAEKHPTSKPLVLWLNGGPGCSSIGVGALVEHGPFKPGDNNVLVKNHYSWNKVANVLYLESPAGVGFSYSSNTSFYTIVTDEITARDNLVFLQRWFTEFPEYSKNDFFITGESYAGHYVPQLAQLIVQTKANFNLKGIAIGNPLMEFDTDLNSKGEFLWSHGLISDSTYDLFTRVCNYSTIRRQSIHKNLSKVCATINKLVFTEVSDYIDQYDVTLDVCLSSANQQAYVLNQLQETQKIDVCVDDKAVTYLNRKDVQEALHAKLVGVSKWSTCSRVLHYDRRNLEIPTISILGSLVNSSIRVLVYSGDQDSVIPLMGSRSLVNGLAKELGLNTTVAYRVWFEGKQVAGWTQVYGDILSYATIRGASHEAPLTQPQRSLVLFKAFLKGKPLPSIV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1595 461 PANTHER CARBOXYPEPTIDASE 8 459 - -
Ssu4g1595 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 459 IPR001563 GO:0004185|GO:0006508
Ssu4g1595 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Ssu4g1595 461 SUPERFAMILY alpha/beta-Hydrolases 35 458 IPR029058 -
Ssu4g1595 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Ssu4g1595 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Ssu4g1595 461 Gene3D alpha/beta hydrolase 29 288 IPR029058 -
Ssu4g1595 461 Gene3D - 309 345 - -
Ssu4g1595 461 Gene3D - 356 454 - -
Ssu4g1595 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Ssu4g1595 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Ssu4g1595 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Ssu4g1595 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1595 Ssu-Chr4 27327842 27330538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1595 314 457 Calmodulin-binding Proteins AT2G22960 31.293 1.37e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1595 K16297 - gmx:100793889 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1595 4 27327842 27330538 Ssu7g1120 7 24822083 24826652 ECH
Ssu4g1595 4 27327842 27330538 Ssu4g1595 4 27327842 27330538 ECH