Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1594 ATGGCGAAGCGTTTGATTCCACTGTTCAATCGGGTTTTGGTGGAGAAAATCCTGCCTCCGTCGAAGACCAACGCTGGCATTTTGTTACCCGAGAAATCCACCAAGCTGAATTCCGGAAAAGTTATTGCTGTTGGCCCTGGCATTCACAGTAAGGATGGGAAGCTAATTCCTGTGGCTGTAAAGGAAGGTGACACTGTTCTTTTGCCTGAATATGGGGGAACTGAGGTGAAGCTTGATAACAAAgaGTATCATCTGTATAGAGACGATGATATACTGGGGACACTGCATGATTGA 294 0.4558 MAKRLIPLFNRVLVEKILPPSKTNAGILLPEKSTKLNSGKVIAVGPGIHSKDGKLIPVAVKEGDTVLLPEYGGTEVKLDNKEYHLYRDDDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1594 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 Hamap Co-chaperonin GroES [groES]. 4 96 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 Pfam Chaperonin 10 Kd subunit 5 94 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 PANTHER GROES-LIKE FAMILY PROTEIN 1 97 - -
Ssu4g1594 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Ssu4g1594 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu4g1594 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Ssu4g1594 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1594 Ssu-Chr4 27323441 27325697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1594 3 96 Calmodulin-binding Proteins AT5G20720 38.542 1.60e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1594 K04078 - gmx:100306384 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1594 4 27323441 27325697 Ssu4g1594 4 27323441 27325697 ECH