Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1589 ATGCACCACTTTGCCATGGACAGCTCTCACCTCCTCCAATtccttaacaacaacaacaacaaccacaacaacaccTCCTTCTTCCACGCTGCACCACACACCATGCATCACACTTTCTCTACTGATTCCTCCAATAATTACTACCCCTTCCATGTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTCGCTGCCATGAAGAACCACAAGGAAGCCGAGAAGAGAAGGAGGGAGAGAATCAACTCCCACCTCGACGAGCTTCGCACTCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTCCAGCGAGTGAAGGAGCTGAAGCAGCAAACGTCGGAGATTACGGAGCTCGAGACGGTTCCGTCGGAGACGGACGAGATCACGGTGCTCTCGACCGGCGGGGACCACGGCGGCGACGGGAGGCTGATATTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGACCTCATCCCCGACCTCATAGAAATCCTCAACTCTCTTCACCTCAAAACCCTCAAAGCGGAAATGGCCACGCTCGGAGGAAGGACGCGGAACGTTCTCGTGGTGGCTGCTGATAAAGAACACAGCATTGAGTCCATCCATTTCCTTCAGAACTCGCTCAAGTCCTTGCTGGACCGGTCCAGTTCCAGCGACAGGTCAAAACGACGCCGTGGCTTAGACCGAAGACTTATGTCTTAA 726 0.5207 MHHFAMDSSHLLQFLNNNNNNHNNTSFFHAAPHTMHHTFSTDSSNNYYPFHVSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDHGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLLDRSSSSDRSKRRRGLDRRLMS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1589 241 Coils Coil 73 93 - -
Ssu4g1589 241 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 8 240 - -
Ssu4g1589 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 124 IPR036638 GO:0046983
Ssu4g1589 241 Gene3D - 62 128 IPR036638 GO:0046983
Ssu4g1589 241 CDD bHLH_AtAIG1_like 63 138 - -
Ssu4g1589 241 SMART finulus 73 122 IPR011598 GO:0046983
Ssu4g1589 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Ssu4g1589 241 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Ssu4g1589 241 PANTHER TRANSCRIPTION FACTOR BHLH30 8 240 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1589 Ssu-Chr4 27240248 27241386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1589 47 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 70.492 3.51e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1589 HLH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1589 - K22484 gmx:100802566 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1589 4 27240248 27241386 Ssu4g1589 4 27240248 27241386 ECH