Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1587 ATGCCTTACGTGGTCCGAGAGAACCTCTCGATCGGCAACATCGGCGATGCGGCGGAGATTCTCCAAAACGGCGCCGCTCACAGCGTCACGCACATCCTCTCCGTCCTCAGCTCCGTCTCCGTCTCCTTCTTCTCGGAGTGGCGCCCGGGCCTCTCCATCCCCGCCAAGGACATCACCAAGGTCCACGTCGCCGACGCCGGCCCCGCCAAATCGGCGCTCCCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCCACGACCTCAAGCTCGTGAGGATGGCCGTGCCTCTGAGAGACACCGAGAACGAGGACCTTCTGGATTACTTGGAAGTCTGCATCGATTTCATTGATCGCAGTCGGAAGGAAGGCGCCGTTCTCGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCGTATTTGATGAGGACCGAACGTCTATCTGTAGAAGATGCCCTTGAATTGTTAAGGCAGAGCTGTAAATTTGTTTGCCCCAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCTAGCCCTATATACAAGCGCTTTCGTCTAAAGGTACTAGGTGAGAATCATTTCTCAGGGTTGAGGATAGATAGTTCTAAACTTGGTGCAGATCCTGGCATGCCTGTAGAAATTTCGTCAGAGGTGGAAGGAGCTGCTAAAGTAGAAAATAATCGAAGTCCTACATATCGCTGTAAGAAGTGCCGACGGCTTGTTGCATTGCAAGAACATGTCATAGATCATGTTCCGGGTGAGGGTGAGACAGCCTTTGAGTGGCACAAACGGAAAAGTGGCAACCCTTTCAACAAGTCTAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTACGGTGGATGAAAGCTGGTAAGAAAACATTCAATCAACTACAATACTACAATGTCTCTATTTTTCCAACAAGCTGTGAATTTATGCTGCACTTTTTGTGCAGAATGTTCCCATAA 1011 0.5025 MPYVVRENLSIGNIGDAAEILQNGAAHSVTHILSVLSSVSVSFFSEWRPGLSIPAKDITKVHVADAGPAKSALPPEKLLYSLEYAGHDLKLVRMAVPLRDTENEDLLDYLEVCIDFIDRSRKEGAVLVHCFAGVSRSAAVITAYLMRTERLSVEDALELLRQSCKFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKVLGENHFSGLRIDSSKLGADPGMPVEISSEVEGAAKVENNRSPTYRCKKCRRLVALQEHVIDHVPGEGETAFEWHKRKSGNPFNKSNESECSSIFIEPLRWMKAGKKTFNQLQYYNVSIFPTSCEFMLHFLCRMFP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1587 336 PIRSF DUSP12 82 316 IPR016278 GO:0006470|GO:0008138
Ssu4g1587 336 PIRSF DUSP12 4 43 IPR016278 GO:0006470|GO:0008138
Ssu4g1587 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 128 138 IPR016130 GO:0016311|GO:0016791
Ssu4g1587 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 185 IPR029021 -
Ssu4g1587 336 CDD DSP_DUSP12 5 188 - -
Ssu4g1587 336 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 186 IPR020422 GO:0006470|GO:0008138
Ssu4g1587 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 162 IPR000387 GO:0016311|GO:0016791
Ssu4g1587 336 Gene3D Protein tyrosine phosphatase superfamily 4 203 IPR029021 -
Ssu4g1587 336 SMART dsp_5 1 183 IPR020422 GO:0006470|GO:0008138
Ssu4g1587 336 Pfam Dual specificity phosphatase, catalytic domain 91 181 IPR000340 GO:0008138|GO:0016311
Ssu4g1587 336 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1587 Ssu-Chr4 27179327 27181837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1587 91 181 Protein tyrosine phosphatase (PTP) family AT3G06110 39.130 2.26e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1587 K14819 - gmx:100776877 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1587 4 27179327 27181837 Ssu4g1587 4 27179327 27181837 ECH