Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1573 ATGGGTAGCAGAAGTAGAACGGTAAACGTTAACACTCAAGACACTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCATCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAAACCTAGAGCAATCTCTTGGATTTCGCGTTGAGGATACCATCAATCTTAGCAGAAATTCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTAGTGCTTTAAATAAGTCAATTGCAACATCAGATATAAACCTCTCTACTGCTATTGTTGGGTCTCAAACATTACCATTACAAAAAGACTCACAACCAACTCTAGCTTCAACATCTACTGGTCATCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAggCTGGAAAGGGGTGAATCCAGTGAAAGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCACAAAATCGTGAGGCTGCCAGGAAAAGTCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAACGAGCTCGCCAGCAGggAATATTTATTTCAAGCGCTAATGATCAAGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTAAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCCGAACTTCTCAAGCTTCTTGTAAGTCAGTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAACAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCATTGCAGCAGTCACTATCTGAGACATTGGCTAATGGTTCACCCAGCTCATTAGGCTCCTCAGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGACAATCTACGACAACAAACATTACAACAAATGCTTCGAATATTCACAACTAGGCAATCGGCTCGAGCTCTTCTCGcaataagtgattatttttcaCGACTGCGAGCCCTGAGTTCTCTATGGCTTGCCAGGCCAAGGGAGTAA 1389 0.4255 MGSRSRTVNVNTQDTNKVVNGMPSYAPPLPSSSSSMGIEATNVHPSRISEFGNLEQSLGFRVEDTINLSRNSMFNQMKSNSQALGADIQFSALNKSIATSDINLSTAIVGSQTLPLQKDSQPTLASTSTGHRENWGETNMADASPRTDTSTDDTEDKNQRLERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSANDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSSLGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRIFTTRQSARALLAISDYFSRLRALSSLWLARPRE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1573 462 SMART brlzneu 173 236 IPR004827 GO:0003700|GO:0006355
Ssu4g1573 462 Gene3D - 176 229 - -
Ssu4g1573 462 Pfam Seed dormancy control 260 335 IPR025422 GO:0006351|GO:0043565
Ssu4g1573 462 MobiDBLite consensus disorder prediction 148 179 - -
Ssu4g1573 462 Pfam Basic region leucine zipper 173 219 IPR004827 GO:0003700|GO:0006355
Ssu4g1573 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Ssu4g1573 462 CDD bZIP_HBP1b-like 177 229 - -
Ssu4g1573 462 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 62 462 - -
Ssu4g1573 462 PANTHER TRANSCRIPTION FACTOR TGA9 62 462 - -
Ssu4g1573 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Ssu4g1573 462 MobiDBLite consensus disorder prediction 115 179 - -
Ssu4g1573 462 MobiDBLite consensus disorder prediction 115 147 - -
Ssu4g1573 462 ProSiteProfiles DOG1 domain profile. 242 459 IPR025422 GO:0006351|GO:0043565
Ssu4g1573 462 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Ssu4g1573 462 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1573 Ssu-Chr4 26965027 26970284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1573 140 462 bZIP Transcription Factor Family AT3G12250 74.018 5.48e-172 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g1573 DOG1 8.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1573 K14431 - gmx:100780071 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1573 4 26965027 26970284 Ssu4g1573 4 26965027 26970284 ECH