Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1572 ATGGCTAACAACGAGAACAAGGAAAGTGACTCTGACTTTTTCATGCATCAGATCAATGAGGACGCTAATGAAGAAGAACAGGACATAGAAGCTGTCGAGTACAAGAGTGAGAGTAGTAATCAGTGTGGCAGTGACAATGAGGGGAATCGTAGAACACAACCTCATTCTCAACAATGGCCTCAAAGTTACAGAGAAGCCACTGATTCTTACTCAATTTCCGCTGCTCCAAATCTTGGATCAATTCTACTAGCACCAAGTGTTATTTATTCAAGCTTTGTCGGTGGTGGTTCAAAGAGTTACTTAGAACACGATGAAAGGACTTCTTTTCTATCTGGTGAGGAGCTCACTAATCAATTTCAAGAAGGGATCACAAGAAGGCAATCAACATGGTGGGAGAAAGCTTCAATTCAAATGCAAGTTCCTGAAGAATTACCTATTGGTTATGGATGTAGCCTCACTCAAACAATATTTAATGGGATTAATGTGATGGCTGGAGTTGGCCTTCTATCTACACCTTATACAGTGAAACAAGCTGGGTGGGCGAGTTTGGCTGTGATGCTTTTTTTTGCAGTTGTATGTTGTTATACGGCAGACCTTATGAAACACTGCTTTGAAAGCAAAGAAGGGATCATTAGCTACCCAGATATAGGAGAAGCTGCTTTTGGAAGATACGGTCGACTTATTGTATCAGTAAGcatgtttttgTCATATTGCGTGGAGTTTATCATCTTGGAAGGAGATAACCTCACTGGGCTGTTTCCTGGAACATCCTTGAACTGGGGCAGTTTCCAGTTGGACTCCAAGCACTTGTTTGCAATTTTGACTGCATTTGTTATTCTCCCAACTGTCTGGTTGAAGGATCTTCGTTTAATCTCCTATCTCTCAGCTGGAGGGGTTGTTGCTACAGCTTTGATTACTATCTGTGTGTTTTTTGTTGGGACAACAGATGCTGTTGGGTTCCATCACACTGGTCCATTGGTGAATTGGAATGGCATTCCCTTTGCTTTTGGTATCTTTGGGTTTTGCTTTGCAGGACATTCAGTTTTTCCAAATATTTATCAGTCTATGGCTGACAAAAAAGAATTTACCAAGGCAGTGATTGCAAGTTTTATTCTATGCGTGTTAATATATGGAAGCGTTGCAGTCATGGGATTTCTCATGTTTGGTGAAGGGACTTTGTCTCAGATAACATTGAATCTACCACCAAATGCATTTGCTTCAAAAATTGCCTTGTGGACAATATCAATAGCTCACAATGTTTATGGAGTATGCATATGCCACTGTAAAAATGCAAAACAGCCGTTTTGTTTTACTAGAACAGGAGTTGAACGAAAAATAATATGGATTGTTGAAGGGCCGGACCTGGACCTAGTCCAGAGGGTGACGGTCTAG 1392 0.4073 MANNENKESDSDFFMHQINEDANEEEQDIEAVEYKSESSNQCGSDNEGNRRTQPHSQQWPQSYREATDSYSISAAPNLGSILLAPSVIYSSFVGGGSKSYLEHDERTSFLSGEELTNQFQEGITRRQSTWWEKASIQMQVPEELPIGYGCSLTQTIFNGINVMAGVGLLSTPYTVKQAGWASLAVMLFFAVVCCYTADLMKHCFESKEGIISYPDIGEAAFGRYGRLIVSVSMFLSYCVEFIILEGDNLTGLFPGTSLNWGSFQLDSKHLFAILTAFVILPTVWLKDLRLISYLSAGGVVATALITICVFFVGTTDAVGFHHTGPLVNWNGIPFAFGIFGFCFAGHSVFPNIYQSMADKKEFTKAVIASFILCVLIYGSVAVMGFLMFGEGTLSQITLNLPPNAFASKIALWTISIAHNVYGVCICHCKNAKQPFCFTRTGVERKIIWIVEGPDLDLVQRVTV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1572 463 MobiDBLite consensus disorder prediction 1 64 - -
Ssu4g1572 463 PANTHER OS05G0424000 PROTEIN-RELATED 36 418 - -
Ssu4g1572 463 Coils Coil 15 35 - -
Ssu4g1572 463 PANTHER AMINO ACID TRANSPORTER AVT1A 36 418 - -
Ssu4g1572 463 MobiDBLite consensus disorder prediction 34 64 - -
Ssu4g1572 463 Pfam Transmembrane amino acid transporter protein 151 410 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1572 Ssu-Chr4 26893795 26898208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1572 58 417 Amino Acid or Auxin Permease AAAP Family AT2G41190 63.462 9.13e-165 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1572 K15015 - gmx:100790344 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1572 4 26893795 26898208 Ssu4g1572 4 26893795 26898208 ECH