Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1566 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCCCTGGATTACCTGAACCTCCTCATCAACGGGCAGGCTTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGTCTGGTCCACGCGCACCGCTGCATACTCGCGGCGCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCGCCATCTGGGCTCGACCCGGCTGGGCCGCGAGCCAGCTCGCGCTCCGGGGTCATACCCGTCAACTCCGTGGGCTACGAGGTCTTCCTTCTCATGCTGCAGTTTCTCTACAGCGGCCAAGTCTCTATTGTTCCGCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGAGGCTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCGCCGCGGCTAGATACTTCGGCGTCGAACAGCTCGCATTGCTCACTCAGAAACAACTGGCCAGCATGGTAGAGAAGGCTTCCATCGAGGATGTAATGAAAGTGCTGCTGGCGTCAAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACCTTGTGGCAAAGTCAGGTCTCCCTCCCGAGGTTCTCGCCAAGCACCTCCCCATAGACATTGTGGCCAAGATCGAAGAGCTTCGTCTCAAATCCTCCCTCGCGCGCCGCTCCCTGGTGTCCCACCACCACAGCCAcggccaccaccaccaccaccaccaccacaacgcTGCCCTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGATGTGGAACTCGTGAAGCTCATGGTGATGGGAGAAGGCCTCAACCTCGACGAAGCGCTGGCCTTACCCTATGCGGTGGAGAATTGCAGCAGGGAAGTGGTGAAGGCCTTGCTGGAACTCGGCGCGGCCGATGTCAACTACCCGTCCGGCCCCGCCGGGAAGACGCCGCTGCACATTGCGGCGGAGATGGTGTCGCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCCGACCCCAACGTCCGCACCGTGGACGGGGTCACCCCGTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAGGGTGCTGTCCCGGGACTGACCCACATCGAACCCAACAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTTGTCATGTCGCGAGAAGAAGGCAAtgccaacaacaacaacaacaacaatgctCCTTCTAATTCCGCAGCACCCATTTACCCTCCCCCCATGAACGAGGACCAcaacagcagcagcagcagcggCAACAACATTGGTAACCTCAACTTGGATTCCAGGTTGGTGTATCTCAACCTCGGTGCCACCGCTCCCATGAGTTCTAGGTTGGATGGTGCCGATGACGAGAGAGAAGCCATGAACACAACCATGTACCACCACCACTCTCATGACTTCTAG 1440 0.5576 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRASSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVSHHHSHGHHHHHHHHNAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNNNNAPSNSAAPIYPPPMNEDHNSSSSSGNNIGNLNLDSRLVYLNLGATAPMSSRLDGADDEREAMNTTMYHHHSHDF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1566 479 SUPERFAMILY POZ domain 9 154 IPR011333 -
Ssu4g1566 479 Pfam Domain of unknown function (DUF3420) 191 254 IPR024228 -
Ssu4g1566 479 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 476 IPR044284 GO:0099402
Ssu4g1566 479 SMART BTB_4 25 156 IPR000210 GO:0005515
Ssu4g1566 479 MobiDBLite consensus disorder prediction 395 410 - -
Ssu4g1566 479 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Ssu4g1566 479 PANTHER REGULATORY PROTEIN NPR5 1 476 - -
Ssu4g1566 479 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
Ssu4g1566 479 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Ssu4g1566 479 Gene3D Potassium Channel Kv1.1; Chain A 3 189 IPR011333 -
Ssu4g1566 479 MobiDBLite consensus disorder prediction 223 242 - -
Ssu4g1566 479 CDD BTB_POZ_NPR_plant 8 156 - -
Ssu4g1566 479 SMART ANK_2a 312 341 IPR002110 GO:0005515
Ssu4g1566 479 SMART ANK_2a 277 307 IPR002110 GO:0005515
Ssu4g1566 479 ProSiteProfiles Ankyrin repeat region circular profile. 312 342 - -
Ssu4g1566 479 Gene3D - 240 360 IPR036770 -
Ssu4g1566 479 MobiDBLite consensus disorder prediction 223 239 - -
Ssu4g1566 479 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Ssu4g1566 479 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
Ssu4g1566 479 MobiDBLite consensus disorder prediction 395 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1566 Ssu-Chr4 26694028 26696400 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu4g1566 Ank_2 5.7e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1566 K14508 - gmx:100816086 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1566 4 26694028 26696400 Ssu4g1566 4 26694028 26696400 ECH
Ssu4g1566 4 26694028 26696400 Ssu7g2903 7 62662147 62665539 PCT