Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1553 ATGGGGATGGCTGCAGAGTCACAGTTTCATGTCTTGGCTGTCGATGACAGCCTCATAGATAGGAAGCTCATTGAGAGGCTACTCAGAACCTCTTCCTATCAAGTTACTACAGTTGACTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGCGTGAGAATGATGAGAGCAACCCAAGTACACCGTCTGTTTCTCCCAACAATCATCAGGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAGCAGATGCTTGGAGGAAGGAGCAGAGGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAATAAGCTTAAACCCCATATGAAGAAGACCAAGTTGAAAGATCAAAAGCAAGGAACAGCAGAAAAGCTTGAAAACTCAGAAGTTCAACAGCAACAGCCACAACAAGCACCAAAATCCCAAGATCCTCAGCCAGAGTCAGAGTCACATTCACAAACAACTATAGAACAACAGCAACAATCACTACAACAAGCCAATAATAACAAGAGGAAGACCATGGAACAGGGGCTTTCACCTGAGACTGACAGAACAAGACCAAGGTACAGTGGCATAGCCACTGTGGTATGA 699 0.4363 MGMAAESQFHVLAVDDSLIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENDESNPSTPSVSPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDQKQGTAEKLENSEVQQQQPQQAPKSQDPQPESESHSQTTIEQQQQSLQQANNNKRKTMEQGLSPETDRTRPRYSGIATVV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1553 232 Pfam Response regulator receiver domain 11 140 IPR001789 GO:0000160
Ssu4g1553 232 CDD REC_typeA_ARR 11 141 - -
Ssu4g1553 232 MobiDBLite consensus disorder prediction 160 211 - -
Ssu4g1553 232 Coils Coil 147 167 - -
Ssu4g1553 232 MobiDBLite consensus disorder prediction 144 232 - -
Ssu4g1553 232 Gene3D - 10 222 - -
Ssu4g1553 232 Coils Coil 192 212 - -
Ssu4g1553 232 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Ssu4g1553 232 SUPERFAMILY CheY-like 8 140 IPR011006 -
Ssu4g1553 232 SMART REC_2 9 142 IPR001789 GO:0000160
Ssu4g1553 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 3 228 - -
Ssu4g1553 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 228 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1553 Ssu-Chr4 26523389 26524898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1553 1 232 Response Regulator Gene Family AT3G57040 64.634 1.94e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g1553 Response_reg 1.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1553 K14492 - gmx:100814494 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1553 4 26523389 26524898 Ssu4g1553 4 26523389 26524898 ECH