Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1549 ATGGTTGCATTATTCTCCCCTCCTTTGTTCTCAGCCATGGGATGGCTCTTAGAGGAGGAGCCATTAAGCTATAACCAGAACTGCTTCTATAAAGATGAAGTGTCCTCGGAGTACTCATTTCCTTATCAATTTTCTTCACCACAGGCTCAGATTGAGGTTGAAAGGTCTACTGCACCCTCCTCTGATCCTGCCATGGTCAAGAAGCTTAGCCACAATGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATAACTTGGTTTCTTCACTTCGTTCATTACTTCCAGTGGCAGATCAAACGAAAAAAATGAGCATTCCGGCAACAGTTTCGCGAGTCTTAAAATACATACCCGAGTTACAACAGCAGGTGCAAGGACTAACTAAGAAAAAAGAGGAGCTACTGTGTAGAATTTCTCGGCAAGGAGATGCAGTGAACAAAGAATCTAAAAGGAAAATTTCCCACCACaactcttattttgttgtttcaaCAAGTAGGCTCAACGATTGTGAAGCTGTTATTCACATTTCCTCTTATGACGTCCACAAGGCTCCACTATCCGAGATCTTGCACTGTTTAGAAAATAATGGGCTTTCTCTGCTAAATGCTTCTTCCTCTAAAACCTTTGAAGGGAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAACCTCAGAGATTAGAATCCGAGGTTCTGACTGAAAAGCTTTTGTCAATATATGATCAAAAGCAAAGGATTTTCTAA 738 0.4106 MVALFSPPLFSAMGWLLEEEPLSYNQNCFYKDEVSSEYSFPYQFSSPQAQIEVERSTAPSSDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPVADQTKKMSIPATVSRVLKYIPELQQQVQGLTKKKEELLCRISRQGDAVNKESKRKISHHNSYFVVSTSRLNDCEAVIHISSYDVHKAPLSEILHCLENNGLSLLNASSSKTFEGRVFYNLHFQVEKPQRLESEVLTEKLLSIYDQKQRIF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1549 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Ssu4g1549 245 Pfam Helix-loop-helix DNA-binding domain 67 119 IPR011598 GO:0046983
Ssu4g1549 245 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 240 - -
Ssu4g1549 245 CDD bHLH_AtORG2_like 67 139 - -
Ssu4g1549 245 MobiDBLite consensus disorder prediction 56 80 - -
Ssu4g1549 245 Gene3D - 60 155 IPR036638 GO:0046983
Ssu4g1549 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 118 IPR011598 GO:0046983
Ssu4g1549 245 SMART finulus 72 124 IPR011598 GO:0046983
Ssu4g1549 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 137 IPR036638 GO:0046983
Ssu4g1549 245 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1549 Ssu-Chr4 26403921 26406843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1549 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.625 1.79e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1549 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1549 - - gmx:100803424 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1549 4 26403921 26406843 Ssu4g1549 4 26403921 26406843 ECH