Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1547 ATGGGATGGCTCTTAGAGGAGGAGCCATTAAGCTATAACCAGAACTGCTTCTATAAAGATGATGTGTCCTCGGAGTACTCATTTCCTTATCAATTTTCTTCACCACAGGCTCAGATTGAGGTTGAAAGGTCTACTGCACCCTCCCCTGATCCTGCCATAGTCAAGAAGCTTAGCCACAATGCTAGTGAACGTGATCGTCGCAAGAAGGTCAATAACTTGGTTTCTTCACTTCGTTCAGTTCTTCCAGTGGCAGATCAAACGAAAAAAATGAGCATTCCGGCAACAGTTTCGCGAGTCTTAAAATACATACCCGAGTTACAACAGCAGGTGCAAGGACTAACTAAGAAAAAAGAGGAGCTACTGTGCAGAATTTCTCGGCAAGGAGATGCAGTGAACAAAGAATCTAAAAGGAAAATTTCCCACCACaactcttattttgttgtttcaaCAAGTAGGCTCAACGATTGTGAAGCTGTTATTCACATTTCCTCTTATGACGTCCACAAGGCTCCACTATCCGAGATCTTGCAATGTTTAGAAAATAATGGCCTTTCTCTGCTAAATGCTTCTTCCTCTAAAACCTTTGAAGGGAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAACCTCAGAGATTAGAATCCGAGGTTCTGACTGAAAAGCTTTTGTCAATATATGATCAAAAGCAAAGGATTTTCTAA 702 0.4074 MGWLLEEEPLSYNQNCFYKDDVSSEYSFPYQFSSPQAQIEVERSTAPSPDPAIVKKLSHNASERDRRKKVNNLVSSLRSVLPVADQTKKMSIPATVSRVLKYIPELQQQVQGLTKKKEELLCRISRQGDAVNKESKRKISHHNSYFVVSTSRLNDCEAVIHISSYDVHKAPLSEILQCLENNGLSLLNASSSKTFEGRVFYNLHFQVEKPQRLESEVLTEKLLSIYDQKQRIF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1547 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 106 IPR011598 GO:0046983
Ssu4g1547 233 CDD bHLH_AtORG2_like 55 127 - -
Ssu4g1547 233 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 228 - -
Ssu4g1547 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 228 IPR015660 GO:0003700|GO:0006357
Ssu4g1547 233 Gene3D - 51 143 IPR036638 GO:0046983
Ssu4g1547 233 SMART finulus 60 112 IPR011598 GO:0046983
Ssu4g1547 233 Pfam Helix-loop-helix DNA-binding domain 55 107 IPR011598 GO:0046983
Ssu4g1547 233 Coils Coil 103 123 - -
Ssu4g1547 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1547 Ssu-Chr4 26381663 26384486 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1547 50 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.340 1.14e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1547 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1547 - - gmx:100803424 364.385