Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1543 ATGAAGGTTGAAACTGAAGAAAACCAGAGTGATTGTGCTGAATTTCAGAGAGTACCTGGAACAGATGAATCTGTTTGCAGCCAGCCAGAAAATAGAAGATTGGAATCCAAGAAGAAACTGAAGAAAATGAGGTCAATAAGGCTTCTAAGATTGCCAAGCAAGAGATCAACCACCAGAGGTGGGAGACCCCAATATGATAATCTCTCCATTCTCTCATCTGTTGACACAGAAAGTTTAGAGAGGCCAACACCAATTGAAATGGCAGATGCTTCACCCAATTACATGAAGGCTACCAGCAGTTCTCATGCAAAGGATAGTTTTCAGAATACACAAAGACTATTCACAAAGAAGAGGACTTTGACAAGAATGTCTACTTTGAAACTAAAGAGGAGTCTGACCAGGAAGTTATCTGGAAGGACTGAACCAAAGAGGAAACTGAAGTCCTCAAGATCAATCAAGCTTGCAACTGTCAAGGGCCAAAAGTCAACAAGAAAGCCATCTGAATCTACTTATGGCAGTGATGAGCAGAATTGGAAAAGTACAAGTGATGCTGGTAACAAACCCCAGAGAGTCATTACCAGAAGATTAAGCTTGAAGCCTGTGAGGATCTTAACAAAGATGCCCACTTTTAAATCAAAGAATTCTTCCATGGAGAGAGACCATCAGATATCTCAATCCCCAGACACAAGCTTGCATAGAGCCACCTGTTCTTCTGCCCTCAAGGATTCCCATTTTCCTGATCACATTGACCTCCCTCAAGAGGGAAGTGACTCTCAAGGAGTATCAGCTGCGAAGGTCTGTCCATATTCTTACTGCTCCCTTCACGGTCACCGCCATGGCAATCTGCCTCCACAGAAGCGCTTTGTGTCAATGAGGAGGCGTGTGTTGAAGAGCCAAAAGCCAACGAAAATGGATCATCAACCTGTTACTAGATCAAAGCAGAATAGTAAAGCAAGGAAAGCCACTCAGAGAACTCAATCTTTCCACAGTGAAGATGGAAGatctcattttcaaaacaagaaaaatctgGCAAGGGACTTATGTATTAGTAGTCCTCATGGCACTCCAGCATCCACAGTTACTGTAGATGTGGAATCAACATCAACAGATGTAGTCAAGTTTTCTGCTCCTGATATTGAGATATTGGCGGGAGAAGTAACCATCACAGACAAAAATATGGAGCCTGATTATGAAGTACTGCAGATGAGTTCTGTACAGAAAGAGCCTACACATGCTAGCACCACTGATATGGCATGTGGAGTgcaggaaaaagataaaaaatatatcaaaatgtggCAGTTGATGTATAAGCATGCTGTATTGAGTAACACAGGTAAATGTGAAAATAAGCTGTCCTTTGATGGGAAGGACAAGGAAGGAGGAGATCAAGATTCCCTTGCAATTAATGAAGTAAACAAGTCTTCTTGTCACAAATATTGTGATACAGATCAGGATACAGATGATGAAAACAAGAATGCAATTGAGCTGGTGCAGAAAGCATTTGATGAAATTCTTCTCCCCGAGCCTGAAGACCTCTTTTCTGATGATCATTTTAAATCTGAAGGCATTGATTCAGATGAGGTACTCTTGGAAAAGAGTGAAGGCGAGAGAGAAAGGAATGCCTCACCATCCACAGAATCTCCAAAAGCACAGATAATGGGGACCAAACCTGACCAAAGAACACCAAAAAGCTGGAGCAATCTGAAAAAGTTAATCCTCTTGAAAAGGTTTGTCAAGGCATTAGAGAAGGTAAGAAACATCAACCGCCAAAGACCAAAACGTTTCCCTTCTGATGCTAACTTAGAGATGGAAAAAGTTTTTCTCAAGCACCAAACAtcagaagagaaaaagaatgctGAGGAATGGATGCTTGACTATGCTCTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACGAAAGGTGACACTTCTAGTAGAAGCTTTTGAAACAATTCTGCCATTTCAAGATGCTGAAAATGGTCCACGGTTTTCTGCAACAATGGAGCCTCAAGCAGATCCGATTCAATCCCCTGATGATTCCTCAAATCATAGCAAGGAAGAAGCATCATTTTCTCATGATAGTACTATGGAACTGGCAGATAATGATGGGGATGATCCAGTGCCAGAACTGCACAATCCTATTATGCTCGAAGATAGATGTCTTGAGATTCCTAGAACTGAGACATTCAAGAATATGCCTGCATTTGGAGCTACTGAAGAAGACTTGAATGGAAAGCAAAGTTTAGCTGGCAGTTACGATAATGGGGAGAAGATATCAAGTgacaatgataatatttatcatGGAGAGATCAAAGATACCAGATCAAGTTCCTTAAATGAGCCAGTTGAAAGCTGTCATGAGGAGGCTTCCCCCATTGAAATAGTCAATGATGTTCCAGAAGATTTGCTATCCAATGTGAATACAGAAAATCCACACATCAAATCTGAGTCAGCTGGAAGTGATGTTGAAACCAAGAATCTGATTGGTGATAATGAGGAACAATTTTCCATGTCTAAAAGTTTAATCCTAGAAGGTCTAGTTAGATCACTCAGATCCAATTTGATGGGTTCAGGACCACCAGCAAATCTATTAGATGAACCAACAGCAGACAGAAAAGAAGGAATTGAAAAAGTTAAGCTGGAAGCTGAGACTCTTGAAGAGTTCCCTACAAAGGAACAATCTGAAGCTCCTATGAGTGCTGCTGGAGAACCTCAGAACCCTGTAGAGAAACAGAGCAACACAGGATTGTGGTTCTTGGTGTATAAGCACATGGTATCAAATATGGCTGAAAGCAATTCCAAATCACTAATTGATGGGGCAGATGAGAAAGAGTCAGGGTTTGATGGGAACAGAACAAGAGGAACTTCCATCTCTTATGAAAGTACACCTGTGACTAATCAAGATATGCAATTCAAGGACCATGTTGTAGCTGATCCAGAAGTTGAACTCCAACAGATTGAAGCCATCAAGTTGGTAGAAGAAGCAATCGATTCAATCCTTCCAGATGATCAGGATGAATTAGCAGACAAAGAGTCACTCACTGGCAACATAATTTCAGACAACTCCAAACAATCCGACAGAACTGAAAGAGTGTATGGTGAAGGCCTgaaccaaaaagaggaaaagatgGAATCTGGAAATGGAATAATCcaagaacaacaacaagaatCAGCACCAAAggagcaaaacaaaacaaaccagCAATTGTCTAGAAGCTGGAGCAATCTTAAAAAAGTGATCTTGCTTAGGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTCAACCCAAGAGGGCCCAGATATCTACCTGTAGAGCCTGATTCAGAAgctgaaaaaattaacttaaggCATCAAGACATGGATGAAAGAAAAGGCACCGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCGGCTAGGAAAAGAAAAGTGGAGCTGCTAGTGGAAGCTTTTGAAACAGTCATACcaactataaaaaattga 3510 0.3912 MKVETEENQSDCAEFQRVPGTDESVCSQPENRRLESKKKLKKMRSIRLLRLPSKRSTTRGGRPQYDNLSILSSVDTESLERPTPIEMADASPNYMKATSSSHAKDSFQNTQRLFTKKRTLTRMSTLKLKRSLTRKLSGRTEPKRKLKSSRSIKLATVKGQKSTRKPSESTYGSDEQNWKSTSDAGNKPQRVITRRLSLKPVRILTKMPTFKSKNSSMERDHQISQSPDTSLHRATCSSALKDSHFPDHIDLPQEGSDSQGVSAAKVCPYSYCSLHGHRHGNLPPQKRFVSMRRRVLKSQKPTKMDHQPVTRSKQNSKARKATQRTQSFHSEDGRSHFQNKKNLARDLCISSPHGTPASTVTVDVESTSTDVVKFSAPDIEILAGEVTITDKNMEPDYEVLQMSSVQKEPTHASTTDMACGVQEKDKKYIKMWQLMYKHAVLSNTGKCENKLSFDGKDKEGGDQDSLAINEVNKSSCHKYCDTDQDTDDENKNAIELVQKAFDEILLPEPEDLFSDDHFKSEGIDSDEVLLEKSEGERERNASPSTESPKAQIMGTKPDQRTPKSWSNLKKLILLKRFVKALEKVRNINRQRPKRFPSDANLEMEKVFLKHQTSEEKKNAEEWMLDYALQKVISKLAPAQRRKVTLLVEAFETILPFQDAENGPRFSATMEPQADPIQSPDDSSNHSKEEASFSHDSTMELADNDGDDPVPELHNPIMLEDRCLEIPRTETFKNMPAFGATEEDLNGKQSLAGSYDNGEKISSDNDNIYHGEIKDTRSSSLNEPVESCHEEASPIEIVNDVPEDLLSNVNTENPHIKSESAGSDVETKNLIGDNEEQFSMSKSLILEGLVRSLRSNLMGSGPPANLLDEPTADRKEGIEKVKLEAETLEEFPTKEQSEAPMSAAGEPQNPVEKQSNTGLWFLVYKHMVSNMAESNSKSLIDGADEKESGFDGNRTRGTSISYESTPVTNQDMQFKDHVVADPEVELQQIEAIKLVEEAIDSILPDDQDELADKESLTGNIISDNSKQSDRTERVYGEGLNQKEEKMESGNGIIQEQQQESAPKEQNKTNQQLSRSWSNLKKVILLRRFIKALEKVRKFNPRGPRYLPVEPDSEAEKINLRHQDMDERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVIPTIKN 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 298 312 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 135 192 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 1009 1072 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 1 111 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 883 911 - -
Ssu4g1543 1169 SMART CaM_binding_2 1051 1165 IPR012417 GO:0005516
Ssu4g1543 1169 SMART CaM_binding_2 541 655 IPR012417 GO:0005516
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 219 233 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 1049 1072 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 1025 1043 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 297 337 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 937 962 - -
Ssu4g1543 1169 Coils Coil 1038 1058 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 57 79 - -
Ssu4g1543 1169 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 28 1167 IPR044681 GO:0005516
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 153 188 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 681 707 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 93 111 - -
Ssu4g1543 1169 Pfam Plant calmodulin-binding domain 556 655 IPR012417 GO:0005516
Ssu4g1543 1169 Pfam Plant calmodulin-binding domain 1061 1165 IPR012417 GO:0005516
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 524 543 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 544 563 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 212 233 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 660 707 - -
Ssu4g1543 1169 PANTHER CALMODULIN BINDING PROTEIN PICBP 28 1167 - -
Ssu4g1543 1169 MobiDBLite consensus disorder prediction 524 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1543 Ssu-Chr4 26212670 26216287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1543 430 662 Calmodulin-binding Proteins AT5G04020 33.610 4.34e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1543 - - gmx:100820346 1797.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1543 4 26212670 26216287 Ssu4g1543 4 26212670 26216287 ECH