Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1518 ATGGATCACAGACCGAAAACCAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCAGAACAAgatgatgattttgattattatgGGAATAGTAGTCAGGATGAGAGCCGAGACAGCCAAGGTGGGGGGATTGCAAATCACAGCAATGGGAATGTGCATGAAAGGGACTTGAATTTGTCGAAGAAGAGGAGGTGGTCTCTAAACAGTGACAACGAGGAGAAGAGCAGTTTTTACGGGACACACATGACGGAGGAGCGATATCGATCGATGCTGGGAGAGCATATTCAGAAGTACAAGAGGAGGTTTAAGGATACCCTGAGTAGTCCTGCCCAAAATCAGGCTGTTGTTCCACTCGTGAAAAGCAACTCGGGATTAAAAGCTCGCAAGTTGGGGAATGAGCGCAGGGGAGGATTGCGTGCTGCGGAGACTACATTGGAATGGATGAATGATTCCGGTACTCAGAAACCAGGAAACTACCGTGATGCAGAAGTAGTGCAGCAATATGGCACTGATAGGATTATTTATGAACCTGCATCTTTGGATATTGGGGATAGAATCATTTACAAGATTCCTCCAATCTATGATAAGTTGGCTGAAGTTCTGAATCTCCCAAGCTTCTCGGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGGGAAGCAATACCCCAATATGAATCACTGCAGGCACGACTGAGGGTCATGTCAGCTTCTAATTCTGCCCAAAAATTCAGTCTGAAAGTGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGCATCAAGAGATCTATTTTGTCTGAGGGTGGTGTATTACAGATTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTACGAGATAATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATGTGGAAAAATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTTACTACTTTTCACCGAAAGCAGCTCATCGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGCCAGTATGCGCACCCGGAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGATAGGGAGATGGCAGAAGTGAGGAGGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAGCAGCAAAGGCTTAATTTCCTTATACAACAAACTGAGCTGTACAGTCATTTTATGCAAAACAAGTCAAACTTATTATCTTCAGAAACTTTACCCAAGGTAGATGAAGATACAAATGATCAAGATGCACTGATCGACTCTTCAGATGCTGGGCCTAATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAGAAAGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATGCACTTCCACCAGATGTTGCTGGAGCTAGTAATATTGATTTGCAAACCCCCTCCACCATGCCAGTGGCATCCACGGTTCGAACACCCGAATTATTTAAAGGTTGTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCGGATGAGATGGGACTTGGAAAGACCATTCAGGCCATGGCTTTTTTGGCCCATTTAGCTGAGgaaaaaaatatatggggACCTTTTCTGGTTGTCGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGGCTTCCATATTGGGGCGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCCGATGAGAAGTGTTTTCGTCGTGTGAAATGGCAGTATATGGTTTTAGATGAGGCCCAGGCAATCAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCCGAGTTATGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCATCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTGACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACGTACCTTTACTTTGGAGAGATTCCAAATTCCCTCCCACCTCCTCCATTTGGGGAGTTGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGTTCGGCTGTTGGTCGTGGTATCTCCAGAGAATCTTTTCagaaacattttaatatttttagaccAGAAAATGTTTATCAATCTGTCTTCTCAGAAGATATGTACATTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTCTTATGGAGCGGCTATTATTTTCTATGATGAGATGGGAACAAAAATTCATCAATGAAGCTGTAGACTTTCTAATGGAGACCATAGATGATGATCCAGAATGTAGTTAccttgagaaagaaaaagtgagaacAGTTACGCGAATGTTATTGGTGCCATTGAGATCTGAGACCCAGTTTCTTCAAAAAAGATTGCAAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACATCGAGATAGGCTGTTATCAAATGCTAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTATAATGGACCTAGAAAGCCAGATGGCCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGTATTTTTGGGTCTTCTCCACCTATGCGGAATTTTGACCCTGCAAAATTGCTCACTgacTCTGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACTAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTGCTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATTCCTCTCCAGGCAAAGgataagcaaaagaaaaaacaacctATGAGGGGTATTTGGTTAAATGAAGAAGGTGATGCATCACTGGAAGATCTAACAAGCTCTGCAGCTCAGGGTACTTCAGATTATGATCTTTCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGTTGCCTCAGATAAGCCAACTTCGAggtcaaaaaattctcaaaagatGAGTGAAAATAGTACTACGCCTATGGAGGACGAATTGGATGATGTTGATCCAGTGGGTCAGAAACCCAAGAGACCCAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTGGGACTGCTACCGTGGTCCCAGAGCAGACCCTATTTCCACTTCCACGTGATTTTAGTGCTGGAGGTTCTAAAGCAGAATCAGGCCAAGATAACTCCTGA 4596 0.4123 MDHRPKTKDSLSYSTLFNLEPLMNFQLPEQDDDFDYYGNSSQDESRDSQGGGIANHSNGNVHERDLNLSKKRRWSLNSDNEEKSSFYGTHMTEERYRSMLGEHIQKYKRRFKDTLSSPAQNQAVVPLVKSNSGLKARKLGNERRGGLRAAETTLEWMNDSGTQKPGNYRDAEVVQQYGTDRIIYEPASLDIGDRIIYKIPPIYDKLAEVLNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQYESLQARLRVMSASNSAQKFSLKVSDVDLNSSIPEGAAGSIKRSILSEGGVLQIYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDREMAEVRRREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKVDEDTNDQDALIDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDTECLRLRQAGETDALPPDVAGASNIDLQTPSTMPVASTVRTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKCFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGRGISRESFQKHFNIFRPENVYQSVFSEDMYIKSGNFGFTHLMDLSPQEVTFLATGSLMERLLFSMMRWEQKFINEAVDFLMETIDDDPECSYLEKEKVRTVTRMLLVPLRSETQFLQKRLQTGPSHAPFEALVVPHRDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDYNGPRKPDGPHHLIQEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSAVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQAKDKQKKKQPMRGIWLNEEGDASLEDLTSSAAQGTSDYDLSVDPEGSKSSNKKRKVASDKPTSRSKNSQKMSENSTTPMEDELDDVDPVGQKPKRPKRIKKNVNEKFEDAFTGTATVVPEQTLFPLPRDFSAGGSKAESGQDNS 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1518 1531 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Ssu4g1518 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 1419 1489 - -
Ssu4g1518 1531 Gene3D - 828 897 IPR027417 -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 1433 1448 - -
Ssu4g1518 1531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Ssu4g1518 1531 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 1449 1463 - -
Ssu4g1518 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1386 IPR027417 -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 1512 1531 - -
Ssu4g1518 1531 Pfam Helicase conserved C-terminal domain 1208 1317 IPR001650 -
Ssu4g1518 1531 Gene3D - 1175 1420 IPR027417 -
Ssu4g1518 1531 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Ssu4g1518 1531 SMART helicmild6 1234 1317 IPR001650 -
Ssu4g1518 1531 PANTHER HELICASE SRCAP-RELATED 17 1488 - -
Ssu4g1518 1531 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1488 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Ssu4g1518 1531 Coils Coil 427 466 - -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 488 524 - -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 41 62 - -
Ssu4g1518 1531 CDD SF2_C_SNF 1196 1328 - -
Ssu4g1518 1531 Gene3D - 586 827 IPR038718 -
Ssu4g1518 1531 MobiDBLite consensus disorder prediction 30 66 - -
Ssu4g1518 1531 SMART ultradead3 586 781 IPR014001 -
Ssu4g1518 1531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1208 1392 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1518 Ssu-Chr4 25751591 25765390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1518 611 900 RAD5 or RAD16-like Gene Family AT5G43530 29.167 4.97e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu4g1518 SNF2_N 2.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1518 K11665 - gmx:100780615 2782.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1518 4 25751591 25765390 Ssu4g1518 4 25751591 25765390 ECH