Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1513 ATGGAGAGCCTCCTCAAAGATTTCGAGCTCGAGCCCAAAAATCCCTCCGTCGAAGCTCTCCGCCGATGGAGATCCGCAGTGACGCTCGTCAAGAACCGCCGCCGCCGCTTCCGCATGGTCGCCGATCTCGACAAGCGCTCCAAAGCCGAGCAGATTAAGCAGGGAATCAAGGAAAAAATTCGAATTGCTCTATATGTTCAAAAGGCAGCATTACAATTTATTGATGCTGGTAATCGAGTTGAATACAAGCTATCAAATGAGGCAAGAGATGCTGGTTTTGGTATTCATCCAGATGAGATTGCTTCTATTGTTCGTAGCCATGATAATAAGACCTTAAATGATATTGGCGGAGTTGAAATCATTGCAAGGAAACTGTCAGTTTCTGTGGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCAGACAACAGATTTATGGATTCAATCGTTATACTGAAAAACCTTCTAGATCATTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTCTGATGATTCTCATGGTTTGTGCTGTAGTTTCTATAGGTATAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACATTTGATGGTGTGGGAATCATATTCAGTGTATTCTTGGTAGTCCTTGTTACAGCTGTCAGTGATTACAAGCAATCCCTACAGTTCAGGGATTTggacaaagagaagaaaaagatatttgTTTATGTCACTAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATTGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCGGGATACTTTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAAAtgaagaaaaaccttttcttctcTCTGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTGCAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTATAAACGAGGGAGGAGAGGATGAGACCCCATTGCAGGTTAAATTAAACGGAGTTGCTACTATTATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTCGTGTTGACAATAAGGTTTCTGGTCGAAAAAGCGCTTCGTGGCGAGTTCGCCAGTTGGTCTTCAGATGATGCAATGAAGTTACTGGACTTCTTTGCTATTGCTGTGACCATTGTAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTtgcaatgaaaaaattaatgaatgacAAGGCACTTGTAAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACGGGGACACTGACCACTAACCGAATGGTGGTTaataaaatatggatatgcGAAAAAGCCATGCAGATAGAAGGTAATGAGAGTGCAGACGAACTGAAAACATGTACATCTGAAGGAGTTCTAAACATCCTTTTGCAGGctatatttcaaaatacttCTGCTGAAGTGGTTAAGGATAAAGATGGAAAGGACACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGCTGCCTTTTGGGTGCTGATTTTGATGCCTATGCCCAGCGTAGAGAGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCTGTGGTTGTGGGTCTTCCTGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCatcagaaataattttaaaaatgtgtgataaaattattgattgcaATGGGGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGATGTTATAAATAGCTTCGCTTCTGAAGCTTTGAGAACTCTTTGTTTGGCTTtcaaagagataaatgaaaCCCATGGGGAAACCAACATTCCGGATAGTGGCTATACTCTAATAGCCTTAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAATCTGTTCAAACTTGTATAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATAAATACAGCTAGTGCTATAGCTAAAGAATGCGGTTTACTTACCGAGGGTGGTGTAGCCATAGAAGGTCCAGATTTTTGTGACTTGTCTCCTGAGCAAATGAAGGATGTTATACCAAAAATACAGGTGATGGCACGATCCTTACCACTCGACAAGCATAAGTTAGTAACCAATTTGAGGAGTATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACAAATGATGCTCCTGCACTTCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACAATTGTCAATGTTGTCAAATGGGGACGTGCAGTATATATaaacattcaaaaatttgtGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCATGCATCACTGGTTTGTTGGTTAATAGAATTTGTTTTCCCTTTTATGTTCTGTTGAATTTGTTTCAAGGAACATCAGTGATAGTCTTCCTTCTTTCAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCGCTGGCTACTGAACCTCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAACTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAgtatatatcaattaattatcctTGCGGTTCTAAATTTTGACGGAAAGAGGCTACTCGGACTTGGTGGTTCAGATGCAATGAGAGTGCTCAACACTTTGATATTCAATTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGagatattgaaaagataaacatattcAGAGGCATGTTTGACAGCTggatatttttgttgataattttCGTCACCGTGGCATTTCAAGTAGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACTGTGCCTCTAAACTGGCAACTCTGGTTACTAAGTGTGTTAATCGGAGCAGTTAGCATGCCTATAGCTGTTATCCTCAAGTGCATCCCAGTTGAAAGAGATACTAGTAAGCAGCACCATGATGGTTATGAGGCACTGCCATCTGGTCCCGAGCTGGCATAA 3195 0.3966 MESLLKDFELEPKNPSVEALRRWRSAVTLVKNRRRRFRMVADLDKRSKAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKLSNEARDAGFGIHPDEIASIVRSHDNKTLNDIGGVEIIARKLSVSVDGGVSEESINSRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLMILMVCAVVSIGIGIATEGWPKGTFDGVGIIFSVFLVVLVTAVSDYKQSLQFRDLDKEKKKIFVYVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVATVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLTIRFLVEKALRGEFASWSSDDAMKLLDFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKIWICEKAMQIEGNESADELKTCTSEGVLNILLQAIFQNTSAEVVKDKDGKDTILGTPTESALLEFGCLLGADFDAYAQRREYKILKVEPFNSVRKKMSVVVGLPDGGVRAFCKGASEIILKMCDKIIDCNGEVVDLPEDRANNVSDVINSFASEALRTLCLAFKEINETHGETNIPDSGYTLIALVGIKDPVRPGVKESVQTCIAAGITIRMVTGDNINTASAIAKECGLLTEGGVAIEGPDFCDLSPEQMKDVIPKIQVMARSLPLDKHKLVTNLRSMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFFSACITGLLVNRICFPFYVLLNLFQGTSVIVFLLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILAVLNFDGKRLLGLGGSDAMRVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFVTVAFQVVIVEFLGTFASTVPLNWQLWLLSVLIGAVSMPIAVILKCIPVERDTSKQHHDGYEALPSGPELA 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1513 1064 SUPERFAMILY HAD-like 448 885 IPR036412 -
Ssu4g1513 1064 Gene3D - 132 332 - -
Ssu4g1513 1064 CDD P-type_ATPase_Ca_PMCA-like 138 914 - -
Ssu4g1513 1064 Pfam Cation transporting ATPase, C-terminus 866 1039 IPR006068 -
Ssu4g1513 1064 Gene3D - 15 76 - -
Ssu4g1513 1064 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 661 IPR023299 GO:0000166
Ssu4g1513 1064 Gene3D - 164 1040 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Ssu4g1513 1064 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Ssu4g1513 1064 SMART Cation_ATPase_N_a_2 114 186 IPR004014 -
Ssu4g1513 1064 PANTHER CATION TRANSPORTING ATPASE 44 836 - -
Ssu4g1513 1064 PANTHER CATION TRANSPORTING ATPASE 861 1048 - -
Ssu4g1513 1064 SFLD C1.7: P-type atpase like 431 804 - -
Ssu4g1513 1064 SFLD p-type atpase 431 804 IPR044492 -
Ssu4g1513 1064 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Ssu4g1513 1064 PANTHER CALCIUM-TRANSPORTING ATPASE 44 836 - -
Ssu4g1513 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 201 472 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 719 835 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 548 697 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 106 835 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu4g1513 1064 Pfam Cation transport ATPase (P-type) 503 591 - -
Ssu4g1513 1064 Gene3D - 459 656 IPR023299 GO:0000166
Ssu4g1513 1064 PANTHER CALCIUM-TRANSPORTING ATPASE 861 1048 - -
Ssu4g1513 1064 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1042 IPR023298 -
Ssu4g1513 1064 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Ssu4g1513 1064 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 47 IPR024750 GO:0005516
Ssu4g1513 1064 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1513 1064 Gene3D - 446 797 IPR023214 -
Ssu4g1513 1064 Pfam E1-E2 ATPase 235 427 - -
Ssu4g1513 1064 Pfam Cation transporter/ATPase, N-terminus 117 181 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1513 Ssu-Chr4 25677433 25690874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1513 56 1061 Primary Pumps ATPases AT3G57330 71.173 0.0 1466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1513 K01537 - gmx:100783489 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1513 4 25677433 25690874 Ssu4g1513 4 25677433 25690874 ECH
Ssu4g1513 4 25677433 25690874 Ssu7g2865 7 60818348 60827890 PCT