Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1505 ATGATGGTGATGGGCACGTCGACATGGGCTCGTAACGTAGCTACGATGGATAAAGAGCTCGCAGGAGAAGGTGACAGAGCATGCGGCGATGATGCATCGAGcaatgaCGACGAAGTTAGTGATGGTAGCAATAGTGGTAATGGAGGCAACAATAATGGTAGtgatgacaatgatgatgactgtggtggtgatggaggcAGTGATGGTGGAGATGATAATAACAGTGGTAGTAATGGTGGCGATAGTgaaatggtggtggtggtcgtGGCGATAATGGTGTggcatggtggtggtggcaacgatgACGAAGTTAGTGATGGTAGCAATAGTGGTAGTGGAGGCGATAATAATGGTGATGATGACAATGATGACGActatggtggtggtggaggcaatgatGGTGGAGATGACAGTAATGGTGGTAATAGTGGTGGCGATAGTgaaatggtggtggtggcgacgatgGTGGCGGTGGAGattaGACTAAAAGTTTACCCAAAAAGGATGTATAAAGATGGGGTAGCTATATTCAATGGTGGAGTAATTTGCGTCCGAGGAACCAGGTTTTTGGGTTTTCTTTTATCAGTTATGGAAGATGGTTCAAGAAATAGGACTCGTGATTTCAACATGGCTTCAAGAAAAGCTGAGGAAGCGGCTTGGAGACGCTATGAGGCTACTCAGTGGCTAGAAAGCCAAGTGGGTCCTCTTGGTATATCCAACCAGCCTACAGAGAGAGAAATTATTTCTTGCTTGAGAAATGGTCTGATTCTTTGCAATGCCATTAACAAGATTCATCCAGGAGCAGTGCCTAAAGTTGTGGTTAATCAAGTGGCTTCACAATCACTTACCTGGGATTCACAGCCTTTGCCTGCCTATCAGTATTTTGAAAATGTACGCAACTTTCTGGTTGCGATGGAGGAATTAAAGCTTCCGGCTTTTGAAGCCTctgatcttgaaaggGATACTCTAGAGATGGGATCAGCAGCAAAAGTGGTTGATTGCATTTTGGCACTTAAATCGTTTCAAGAGTTGAAGCAGATGAACAATCAGAATGGATACAACAAACACATAAAATCTCCTTTACCTATGCGGTCAATCAGTAGAATGCATTCAAGAGCTGCAGCTGCATTCCCCTCTGATGCTTGTAGGCACTTGGATTTGTCTGCCACATTGGAAAAAATGCCTCCCAGTGAGAGTAATTTTCCGAAACGAGAAGAAATTGTGGAATTACTTGTCGAGCAACTGGTTGCCCGTTTGTTTGATGCCAAAGAAAATATTGATGGAAACATTATTGCTTCTCTTCGTAATGAGCACCTGGTAATGGATCCAATAAACGTATTTAATCAGATAATGGCATGTTGCAATGGGGAACAGCCTCCTGCAAGGTTCTATGAGGATATTGTAGAAGAAAAGAGTAGCTTACCAGTACCTCATTCCACTTCCGCACCTACGCAATCAGATTCTTTATCTATACCTGACAATTCTAAGCATTGCCAAGCTTGCCCTGGAAAGTGCAAGTGCAATCAGGAGCATCTTTTAGACATGCAGGAAAAAGAACTTCTGgATCTCAAGGCTTTGaagttgaaaattaagaaagagtttgaagagatgCAGTCACAGTTTCAAggattttttaatgatattgGAAGTCAAATACAGGACATGTCAACTAAAGCTCTTGGATATCAGAGAGTTGTAGAAGAGAATAGGAAACTATACAACATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCCTCATTCCGGCCTGAATTGAAGAATGTTGTTGATTTCATTGGGGAAGACGGTTCTCTATTCATTTTAGATCCAACAAAAACACTAAAAGATGGAAGGAAACTTTTTCGGTTTAATCGAGTTTTTGATCCAACAGCTGGTCAAGATGAGGTTTATAAGGATACTCGACCATTAATTAGATCTGTGATGGATGGATACAATGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTCACACCATGAGTGGTCCTTCAGGTGGAACATCCAAGGATATGGGAATTAATTATCTGGCTCTTAATGATCTGTTTCAAATGTCTAATGAAAGGAAGGACATCATAAAGTATGACATTTATGTTCAAATGGTTGAGATTTACAATGAACAAGTTAGAGACCTACTTGCTGCGGACAAAACAGACAACAAATATCCTTTTCATATTCATTATTCCATAGGCTGCAACGATGACGGGTTGAGCCTTCCTGACGCCAGATTGCGTTCAGTGAAGTCTACAACTGATGTTATGACCCTCATGAAACTTGGTGAGGTTAATCGTGCTGTTAGTTCGACTGCAATGAACAATAGGAGTAGTCGTTCCCACAGTGTACTTACTGTGCATGTTCATGGCAAAGATACATCTGGGAGCTCCATTCGCAGTTGCCTGCACCTTGTAGACCTTGCTGGAAGTGAACGAGTAGACAAATCCGAAGTTACAGGGGAAAGACTGAAGGAAGCACAATTTATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACTGCCCTGGCTCAAAAGAATTCTCACATCCCTTACAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGACATGCTAAAACATTGATGTTTGCTCATGTGAGTCCGGATGCAGATTCGTTTGGTGAAACAGTGAGTACTTTAAAGTTTGCTCAGCGGGTTTCTGCTGTGGAACTGGGGGCAGCCCGTTTGAACAAAGAAAGCAGTGAGGTTATGCAACTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAACCAAGGAAGCTCAGAGAGCAATGTTCAATAGAATTAAAGAATCACACACTCCATTAGAGAAACCAACACTGGTGTCTGAGAAAACTCCATTCCGCCCTCGAAGACTTAGCATTGAGAACTGTAGCACTGTAAAGACTGACAAATCTGTGAATCGTGAGGATAGAAGTGGAGCCAAATCACCACCTTTGTTACCTCGTTCGAGAAGATTAAGCTTGGAAGGTTCAAAAACTATCAAGAAAGATAGCTCACAACCAAAAGTATCAGATGATATAATAAACAAAGCTTTACAGTACGAGCCAGTATCTTGGCAGAAATATCACCCAATGCAAGATCCAGAATCAGTGTCAAAACTAAACGGCCATTTCAGCAGTGGCAATTCCAGGTCAGAGTTGCACGCCAAAACCCCTCGAAGTCCTACAAGCATTTCCTATCAAAAGAGATTGGTAAAAGTAAATGGTGGGATGCAAGTTCATCCTCTTAAACTGCCTCAAACACCTGAACCACCAGTGCTGGATGGAAATGATGCACATGGCACTAAGGTGATGGGTAGCACAAATGGAAAAGGATCCCAGATACGAAGATCCTTGAGAACAATTGGGAAACTGATCAACGGCCCTGATAAGAGGAGCCAACAAAATATGGTTGAATTCAAGTCACCGATCAAGGGCACTGACCATACAAAACATGTAAAATCACCAATTTCAGCTGTTGAGAAGACAAAAAGGAGGCAATCTCTAACGGGGATTCAAGCACCACTGCCAAACAACTCACGTAGATCTTCACTTGGAGGGAAGCCAGTAGTAGCATATGACAAGGACACAAATGCTAGAACTCCTCCTACCCATTTAGACACCAAGACTGCAAAACGGTGGCTATAG 3699 0.4001 MMVMGTSTWARNVATMDKELAGEGDRACGDDASSNDDEVSDGSNSGNGGNNNGSDDNDDDCGGDGGSDGGDDNNSGSNGGDSEMVVVVVAIMVWHGGGGNDDEVSDGSNSGSGGDNNGDDDNDDDYGGGGGNDGGDDSNGGNSGGDSEMVVVATMVAVEIRLKVYPKRMYKDGVAIFNGGVICVRGTRFLGFLLSVMEDGSRNRTRDFNMASRKAEEAAWRRYEATQWLESQVGPLGISNQPTEREIISCLRNGLILCNAINKIHPGAVPKVVVNQVASQSLTWDSQPLPAYQYFENVRNFLVAMEELKLPAFEASDLERDTLEMGSAAKVVDCILALKSFQELKQMNNQNGYNKHIKSPLPMRSISRMHSRAAAAFPSDACRHLDLSATLEKMPPSESNFPKREEIVELLVEQLVARLFDAKENIDGNIIASLRNEHLVMDPINVFNQIMACCNGEQPPARFYEDIVEEKSSLPVPHSTSAPTQSDSLSIPDNSKHCQACPGKCKCNQEHLLDMQEKELLDLKALKLKIKKEFEEMQSQFQGFFNDIGSQIQDMSTKALGYQRVVEENRKLYNMVQDLKGNIRVYCRIRPSFRPELKNVVDFIGEDGSLFILDPTKTLKDGRKLFRFNRVFDPTAGQDEVYKDTRPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKDMGINYLALNDLFQMSNERKDIIKYDIYVQMVEIYNEQVRDLLAADKTDNKYPFHIHYSIGCNDDGLSLPDARLRSVKSTTDVMTLMKLGEVNRAVSSTAMNNRSSRSHSVLTVHVHGKDTSGSSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPDADSFGETVSTLKFAQRVSAVELGAARLNKESSEVMQLKEQVENLKIALATKEAQRAMFNRIKESHTPLEKPTLVSEKTPFRPRRLSIENCSTVKTDKSVNREDRSGAKSPPLLPRSRRLSLEGSKTIKKDSSQPKVSDDIINKALQYEPVSWQKYHPMQDPESVSKLNGHFSSGNSRSELHAKTPRSPTSISYQKRLVKVNGGMQVHPLKLPQTPEPPVLDGNDAHGTKVMGSTNGKGSQIRRSLRTIGKLINGPDKRSQQNMVEFKSPIKGTDHTKHVKSPISAVEKTKRRQSLTGIQAPLPNNSRRSSLGGKPVVAYDKDTNARTPPTHLDTKTAKRWL 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 18 33 - -
Ssu4g1505 1232 ProSiteProfiles Kinesin motor domain profile. 582 911 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 38 56 - -
Ssu4g1505 1232 Coils Coil 513 533 - -
Ssu4g1505 1232 ProSiteProfiles Calponin homology (CH) domain profile. 219 343 IPR001715 GO:0005515
Ssu4g1505 1232 Coils Coil 915 945 - -
Ssu4g1505 1232 SMART kinesin_4 580 919 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 Gene3D Kinesin motor domain 524 913 IPR036961 -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1182 1232 - -
Ssu4g1505 1232 SUPERFAMILY Calponin-homology domain, CH-domain 218 352 IPR036872 -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1182 1202 - -
Ssu4g1505 1232 ProSiteProfiles G-protein gamma subunit domain profile. 914 984 IPR015898 GO:0007186
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1217 1232 - -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 953 972 - -
Ssu4g1505 1232 Pfam Kinesin motor domain 611 910 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 Gene3D - 206 360 IPR036872 -
Ssu4g1505 1232 PRINTS Kinesin heavy chain signature 812 830 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 PRINTS Kinesin heavy chain signature 655 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 PRINTS Kinesin heavy chain signature 782 799 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 PRINTS Kinesin heavy chain signature 861 882 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 97 146 - -
Ssu4g1505 1232 Pfam Calponin homology (CH) domain 221 340 IPR001715 GO:0005515
Ssu4g1505 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 946 IPR027417 -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1012 1027 - -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1050 1080 - -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 15 81 - -
Ssu4g1505 1232 PANTHER KINESIN-LIKE PROTEIN KLP-3 201 1219 - -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 1056 1080 - -
Ssu4g1505 1232 SMART ch_5 221 341 IPR001715 GO:0005515
Ssu4g1505 1232 PANTHER KINESIN-LIKE PROTEIN KIN-14L 201 1219 - -
Ssu4g1505 1232 MobiDBLite consensus disorder prediction 982 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1505 Ssu-Chr4 25540699 25557431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1505 512 911 Calmodulin-binding Proteins AT5G65930 39.268 1.39e-66 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1505 K10406 - gmx:100786642 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1505 4 25540699 25557431 Ssu4g1505 4 25540699 25557431 ECH