Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1503 ATGGTGATGGTATGGGAAGATGTAACTGTTGAGCGCCCCGCTAGTTTTGGAGCACACAGCAAGAAGTTGCTTAGTGGAATCACTGGTTTAGCTGAACCTACTAGGATTATGGCCGTCATGGGTCCTTCTGGCTGCGGCAAAACCACCTTCCTTGAGTCTTTAActgGAAAACTTCCTGCAACTGTTGCAGTGACCGGGAACATTCTAATCAATGGGAAGAAGAGAAGCTTGTATTCCAGAGAAGTGTCCTATGTGGCTCAAGAGGAACTATTCTTGGGAACTTTGACTGTAAAAGAGACCCTCACATTCTCTGCAAACATGAGGCTTCCTTCtaaaatgaccaaagaagaGATAGACAAAGTGGTGGAAGAAACCATAATGGAAATGGGTCTAGAAGATTGTGCAGAAAATAGGATTGGGAATTGGCATTCTCGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAGATTTTAACACAACCCCATGTCTTACTTCTTGACGAACCCACTAGCGGACTTGATAGTGCCTCGGCTTTCTATGTGATTCAGGCCCTATGCCACATTGCTCGCAATGGAAAGATAGTTATCTGTTCCATTCACCAGCCCAGTAGTGAGATTTTCGATCTATTTGATGATTTGCTTTTACTCTCAAGTGGGGAAATTGTTTATTTTGGAGAAGTAAAGATGGCTCTAAAGTTTTTTGCCGATGCAGGGTTCCCCTGTCCTACGAGAAGAAATCCTTCAGATCATTTCCTTTTGTGTATCAATTTGGACTTTGACTTGATTGCTGCAGCACTAGAGAAAACACAATTCACTTCGacaacatcaaattcaacaatggGAATGAGAACATCAGAGATCAGAAGGACACTCATTGAGAGTTACAAAGGTTCAAAGCAAATgatcaatgcaagaagaatAATTCAAAAACTGAAACCCAATGAAGAGCAAGAAATTAAGCCCAACATCGGTAGCAGTACCACATGGTGGAAGCAATTGTGTACATTGACCAAACGATCTTTCCTAAACATGACTAGGGACATTGGTTACTACTGGCTGAGGATAATATTCTACACGCTGGTAGGAATCAGTATTGGCACCCTCTTTTTTCATATTGGCACAGGCAACAACTCAATCTTGGCTAGAGGAAAGTGTGTATCCTTCATTTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTAGTATCAAACTTCATATCATCATTCCCTTTCCTTGTTCTGACATCGCTCTCCTCCGGAATAATCATCTACTTCATGGTGCAATTTCATCCGGGTTTAACTAATTGTGCATTTTTCTGTATCAACTTATTCTGCTGCCTATCTGTTGTTGAGTGCTGCATCATGATTGTAGCCTCAGTAGTCCCCAACGTGCTGATGGGACTAGGAACAGGAACTGGTGTAATTGTCTTCATGATGATGCCCTCCGAAATATTCAGATCATTACCTGACATTCCAAAGTTCTTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCTGCTTGGGCAGTGCAGGGACAATACAAGAATGACATGCTGGGGGTTGAATTTGATCCTTTGCTGCCCGGAGATCCCAAAGTTAGTGGAGAAAAAGTCCTAGCATTGGTATTTGGGGTTCCATTGGATCATGGAAAATGGTGGGACTTAACAGCATTGgttactttattattagttcACAGATTGGTTCTTTACTTGGTGCTTCGGTTTGTCAAAAGATCTAAATCACCTAAGCTATGGTTTTATGCCAAGAAAAGTCTACACTTTGCAAAAAGATGTTTACTCAATAACAAGCCATCTACCTCTCCCAGGAAACAAGCTCAGCATCCATTATCGTCACAAGAGGGTTTTATGTCCCCAAACCTTGCAATATAA 1977 0.4041 MVMVWEDVTVERPASFGAHSKKLLSGITGLAEPTRIMAVMGPSGCGKTTFLESLTGKLPATVAVTGNILINGKKRSLYSREVSYVAQEELFLGTLTVKETLTFSANMRLPSKMTKEEIDKVVEETIMEMGLEDCAENRIGNWHSRGISNGEKKRLSIGLEILTQPHVLLLDEPTSGLDSASAFYVIQALCHIARNGKIVICSIHQPSSEIFDLFDDLLLLSSGEIVYFGEVKMALKFFADAGFPCPTRRNPSDHFLLCINLDFDLIAAALEKTQFTSTTSNSTMGMRTSEIRRTLIESYKGSKQMINARRIIQKLKPNEEQEIKPNIGSSTTWWKQLCTLTKRSFLNMTRDIGYYWLRIIFYTLVGISIGTLFFHIGTGNNSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVVSNFISSFPFLVLTSLSSGIIIYFMVQFHPGLTNCAFFCINLFCCLSVVECCIMIVASVVPNVLMGLGTGTGVIVFMMMPSEIFRSLPDIPKFFWRYPMSYLSFAAWAVQGQYKNDMLGVEFDPLLPGDPKVSGEKVLALVFGVPLDHGKWWDLTALVTLLLVHRLVLYLVLRFVKRSKSPKLWFYAKKSLHFAKRCLLNNKPSTSPRKQAQHPLSSQEGFMSPNLAI 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1503 658 Pfam ABC transporter 32 175 IPR003439 GO:0005524
Ssu4g1503 658 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 247 IPR003439 GO:0005524
Ssu4g1503 658 SMART AAA_5 33 232 IPR003593 -
Ssu4g1503 658 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 628 - -
Ssu4g1503 658 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 1 628 - -
Ssu4g1503 658 Pfam ABC-2 type transporter 336 541 IPR013525 GO:0016020|GO:0140359
Ssu4g1503 658 Coils Coil 656 658 - -
Ssu4g1503 658 Gene3D - 5 241 IPR027417 -
Ssu4g1503 658 MobiDBLite consensus disorder prediction 632 658 - -
Ssu4g1503 658 Pfam ABC-2 type transporter 204 256 IPR043926 GO:0140359
Ssu4g1503 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1503 Ssu-Chr4 25518826 25525580 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1503 31 216 Calmodulin-binding Proteins AT2G36910 26.633 2.14e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1503 K05681 - gmx:100802207 1144.41