Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1501 ATGGAGTTGCACGCTAAAGCATGTATTGCAGCGGAGAATAAGAGgagagtgtgtttggtttggGAAGATTTGACAGTGGTGGCACCAAATGTTAGCAGTAGTCCAAAAAGGGCACTGTTAAAAAGGTTAAGTGGTTATGCAGAACCCAACCGGATTATGGCACTCATTGGTCCTTCGGGATCTGGGAAATCTACTTTACTTGCTGCACTCGCTGGGATACTTCCCACCAATGTTAGCACGACCGGAAATGTACTACTCAACGGGACTACCAGAAATACAGGCTGCAGAGATATTTCTTATGTTACTCAAGAAGATTATTTCTTGGGAACTCTAACAGTGAGGGAAACCCTCACATATGCAGCTCACTTGAGGCTTCCTGCTGATATGACTAAAAATGAGATTGACAAGGTGGTAACCAAGATATTGGCTGAAATGGGTCTGCAAGATAATGCAGATAGCAGACTTGGGAATTGGCATTTGAGAGGCATCAGTAGTGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAGATCTTAACTCAACCTCATGTAATGTTTCTGGATGAACCCACTAATGGGTTGGATAGTGCAGCTGCTTTCTATGTGATTTCTTCTCTGTCAAACATAGCACATGATCGAAGAATAGTTATATGCTCCATCCACCAGCCAAGTGGTGAAGTTTTCAACCTTTTTTGA 693 0.417 MELHAKACIAAENKRRVCLVWEDLTVVAPNVSSSPKRALLKRLSGYAEPNRIMALIGPSGSGKSTLLAALAGILPTNVSTTGNVLLNGTTRNTGCRDISYVTQEDYFLGTLTVRETLTYAAHLRLPADMTKNEIDKVVTKILAEMGLQDNADSRLGNWHLRGISSGEKRRLSIGIEILTQPHVMFLDEPTNGLDSAAAFYVISSLSNIAHDRRIVICSIHQPSGEVFNLF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1501 230 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 18 230 - -
Ssu4g1501 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 223 IPR027417 -
Ssu4g1501 230 Pfam ABC transporter 40 191 IPR003439 GO:0005524
Ssu4g1501 230 Gene3D - 8 230 IPR027417 -
Ssu4g1501 230 ProSitePatterns ABC transporters family signature. 163 177 IPR017871 GO:0005524
Ssu4g1501 230 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 18 230 - -
Ssu4g1501 230 SMART AAA_5 49 220 IPR003593 -
Ssu4g1501 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 230 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1501 Ssu-Chr4 25460473 25471123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1501 33 218 Calmodulin-binding Proteins AT2G36910 28.718 9.79e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1501 - K05681 gmx:102659519 411.764