Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1499 atggaaggaACAATTGATAAGGGGTTGTTGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTGAAGACTTATATGCTAGTGGAGGATCCGGCCACCGACGACGTCGTTTCGTGGAATGCTGAAGGGACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTGCGCCAGCTCAATACTTATGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTTTTCAATGACAGGTTCAGGAGAGGTGAGAGAGAACTGTTATATGAGATTCGGCGGAGAAAAGCTTGGACCAGCAAGCAACATCCTAATGTGCCAAACCAAGCCACACCCCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCTTCGGGTTTCACTACTCTTGTGGATGAAAACAAGCGACTTAAGAAGGAGAATGGGGTGTTGAACTCTGAGCTCACAAGTATGAAGAGGAAGTGCAAGGAACTGCTTGATTTGGTTGCCAAATATTCTTCACATGcaaaggagaaggaagaagatGAAAGGCCAAAGCTGTTTGGAGTGAGACTAGATGTTCAAGGAGGGAGGGAGATGAAGAGGAATAGAGCTGAGATAAGTGAAAGCGCAAGCATTATGCTGCCTCAGCCATGCAAATAG 696 0.454 MEGTIDKGLLECGRKCTPPPFLLKTYMLVEDPATDDVVSWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDRFRRGERELLYEIRRRKAWTSKQHPNVPNQATPQDSDEDQRSSSTSSSSGFTTLVDENKRLKKENGVLNSELTSMKRKCKELLDLVAKYSSHAKEKEEDERPKLFGVRLDVQGGREMKRNRAEISESASIMLPQPCK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1499 231 Gene3D - 13 111 IPR036388 -
Ssu4g1499 231 Coils Coil 152 172 - -
Ssu4g1499 231 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1499 231 MobiDBLite consensus disorder prediction 116 148 - -
Ssu4g1499 231 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1499 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 231 IPR027725 -
Ssu4g1499 231 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 231 - -
Ssu4g1499 231 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Ssu4g1499 231 MobiDBLite consensus disorder prediction 115 148 - -
Ssu4g1499 231 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1499 231 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1499 231 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1499 231 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1499 Ssu-Chr4 25419972 25423560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1499 18 204 HSF AT2G41690 56.522 6.10e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu4g1499 HSF_DNA-bind 6.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1499 K09419 - gmx:100802739 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1499 4 25419972 25423560 Ssu4g1499 4 25419972 25423560 ECH
Ssu4g1499 4 25419972 25423560 Ssu7g2853 7 60042830 60045988 PCT