Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1497 ATGGCTTCGTCTTCCTCTGATCCGGGAAAGTCCGCGGAGACTTCGGaagcggcggcggcggcggcggcgaaCGACCAGCTCTTGCTCTACAGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGCTGCACCGCGAAAGAGCGCATCAGCAAAATGCCTCCGTGCGCCGCCGGCAAACGCAGCTCCATATACCGCGGCGTCACGAGGCATAGGTGGACTGGGCGTTACGAAGCTCATCTTTGGGATAAGAGTACGTGGAACCAAAATCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCATATGACCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCAGTGACTGACTATACCAGAGATCTTGAAGAAATGCAGAATGTGTCAAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTATCAAAGTATCGTGGACTCTCCAGTCGATGGGAGCCGTCATATGGCCGTATGGCTGGATCCGATTACTTCAATAGCATACATTATGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGCAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCATATCAAATGGTGGGGATCTAATAAGACTAGACATTCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACTTGGTTCTGCTGGAGATATTTGCAGTGAACTTAAGCAATTGGAACAGAAAGTCCAACCAACAGAACCTTACCAGATGCCACAGTTAGGCTGGCCCCACAATGAGAAAAAGCATGGAAGTTCTTCAGTCTCTGCCTTAAGTATCTTGTCACAATCTGCCGCTTACAAGAGCTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAGCACTGATAATGATgagaatgaaaacaaaaatacagtCAACAAGTTGGATCATGGCAAGGCTATTGAGAAACCATCAAATCATGGAGGAAACGATCGGCTCGACATTGCAATGGGAATGAGTGGGACAATGTCTCTTCAAAGAAATGTTTACCCACTGACACCATTCTTGTCTGCACCACTTTTGACATCCTACAATACTGTTGATCAATTGGTGGATCCTGTTCTGTGGACATCTCTTGCTCCCATACTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACCGAGACCAGTTCCACCTACACTATGTTTCAGCCAGAGGAATGA 1257 0.4439 MASSSSDPGKSAETSEAAAAAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGSDYFNSIHYGAGDDSAAESEYASGFCIERKIDLTSHIKWWGSNKTRHSDAGTRLSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGWPHNEKKHGSSSVSALSILSQSAAYKSLQEKASKRQENSTDNDENENKNTVNKLDHGKAIEKPSNHGGNDRLDIAMGMSGTMSLQRNVYPLTPFLSAPLLTSYNTVDQLVDPVLWTSLAPILPAGLSRTAEVTKTETSSTYTMFQPEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1497 418 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 417 - -
Ssu4g1497 418 PANTHER BNAA03G19580D PROTEIN 5 417 - -
Ssu4g1497 418 ProSiteProfiles AP2/ERF domain profile. 62 128 IPR001471 GO:0003700|GO:0006355
Ssu4g1497 418 Pfam AP2 domain 62 120 IPR001471 GO:0003700|GO:0006355
Ssu4g1497 418 Gene3D AP2/ERF domain 62 130 IPR036955 GO:0003700|GO:0006355
Ssu4g1497 418 MobiDBLite consensus disorder prediction 297 344 - -
Ssu4g1497 418 SMART rav1_2 62 134 IPR001471 GO:0003700|GO:0006355
Ssu4g1497 418 MobiDBLite consensus disorder prediction 264 283 - -
Ssu4g1497 418 PRINTS Ethylene responsive element binding protein signature 110 130 IPR001471 GO:0003700|GO:0006355
Ssu4g1497 418 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Ssu4g1497 418 MobiDBLite consensus disorder prediction 300 338 - -
Ssu4g1497 418 SUPERFAMILY DNA-binding domain 61 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1497 Ssu-Chr4 25290914 25294315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1497 21 416 AP2-EREBP Transcription Factor Family AT2G41710 63.325 4.58e-169 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g1497 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1497 K09285 - gmx:100814117 750.355