Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1483 ATGGAAATTCTATGCTTGTTGCACATTCTGCTAGCTTGGTGTCTATCAAGTTATGAGCTTGTTGGTGCTGAGCTTCACGACCAATCTGTATTACATGCCATCAACCAAGAGCTTAGATTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGTACTTGGCAAGGTGTCAGCTGTGGTAACCACTCGATGGTGGAGAGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCTTTGAAGCTGCTTGATCTTTCAAATAATAACTTTGATGGACCGATTCCTCCTGCTTTTGGAAATTTATCTGATCTTGAGGTTCTAGATTTGTCCTCAAATAAGTTTCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTTAAGGGGTTAGAGAAACTGCAGGATTTTCAAATTTCTAGTAATCATTTGAGTGGTGTTATACCTTCTTGGGCGGGAAATTTAACCAATCTGAGACTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTCGATTTCTGAGCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGCCCAATACCAGCAAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTCCTCACCCTGAATAATTTTAGTGGGGAACTTCCTAAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGTAGGCTCTATTCCTAAGACCATTGGAAACCTTAGTAGCCTAACCTACTTTGAAGCCGATAATAATAATCTTTCTGGTGAGGTTGTGTCCGAATTTGCTCAGTGTTCTAATCTGACCCTCCTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAACCTTCAGGAATTAATTCTTTCTGGAAATAGCCTGTTTGGCGATATTCCGAAATCAATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCTCCCGGCTACAGTACTTGCTGTTGGATCAGAATTTCTTAAGAGGAGAGATCCCCCATGAAATTGGAAATTGTGTAAAACTTCTTGAATTACAATTGGGCAGTAATTATTTGACTGGAACTATTCCTGCTGAGATTGGTCACATTAGGAACTTACAGATAGCTTTAAATTTGAGCTTTAATCATCTTCATGGACCACTGCCCCCTGAATTAGGAAAACTGGACAAACTTGTTTCTCTGGATGTTTCGAACAATCGGCTATCAGGTAATATCCCACCCGAGCTTAGGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGGAGGCCCTGTGCCAACATTTGCACCATTCCAGAAGAGTCTTAGTTCAAGTTTTTTGGGCAATAAGGGGCTTTGTGGGGAGCCTTTGAACTCTTCATGTGGAGACCTTTATGATGATCACAAGGCTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGATGGCACCAATGACAACCCAACTATAATTGCGGGGAGTGTTTTTGTTGATAATCTAAGACAAGCAGTAGACCTCGATGCCGTTGTTAAAGCAACTTTGAAAGACACTAACAAGCTCAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCAGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCTGTAGACAAGACAATAATCAACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTAGTGCGTCCCATTGGCTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAATCTACCAGGAAACCTGAATATCAGCCTGACTGGCCTGCTAGGTTATCCATTGCCATTGGTGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGACATTTCTTCCGGCAATGTTCTCTTGGATGCAAATTTCAAGCCGTTGGTTGGGGAGATTGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTCACAGCACCAGGAAACGTTTATAGCTATGGTGTTGTTCTGTTGGAGATCCTCACAACCAGACTACCAGTTGATGAGGATTTTGGCGAAGGTGTAGATTTGGTGAAATGGGTTCATAGTGCTCCAGTAAGAGGGGAGACTCCAGAGCAGATATTGGATGCTAAGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTCGCGTTGCTGTGCACTGACAATACACCAGCCAAACGACCAAAAATGAAGAATGTAGTGGAAATGCTTCGAGAGATAAACCAAAACTGA 2664 0.4163 MEILCLLHILLAWCLSSYELVGAELHDQSVLHAINQELRFPGWGDANNSDYCTWQGVSCGNHSMVESLDLSHRNLRGNVTLMSELKALKLLDLSNNNFDGPIPPAFGNLSDLEVLDLSSNKFQGSIPPQLGGLRNLKSLNLSNNVLVGEIPMELKGLEKLQDFQISSNHLSGVIPSWAGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGPIPASIFVPGKLEVLVLTLNNFSGELPKEIGNCKALSSVRIGNNHLVGSIPKTIGNLSSLTYFEADNNNLSGEVVSEFAQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPKSILSCKSLNKLDISNNRFNGTIPNEICNISRLQYLLLDQNFLRGEIPHEIGNCVKLLELQLGSNYLTGTIPAEIGHIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPPELRGMLSLIEVNFSNNLLGGPVPTFAPFQKSLSSSFLGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDDGTNDNPTIIAGSVFVDNLRQAVDLDAVVKATLKDTNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIINHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDAKLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREINQN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1483 887 Gene3D Ribonuclease Inhibitor 226 316 IPR032675 -
Ssu4g1483 887 SUPERFAMILY RNI-like 174 485 - -
Ssu4g1483 887 SUPERFAMILY Protein kinase-like (PK-like) 605 882 IPR011009 -
Ssu4g1483 887 Gene3D Phosphorylase Kinase; domain 1 578 684 - -
Ssu4g1483 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 885 - -
Ssu4g1483 887 Gene3D Ribonuclease Inhibitor 26 175 IPR032675 -
Ssu4g1483 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 885 - -
Ssu4g1483 887 Gene3D Ribonuclease Inhibitor 317 413 IPR032675 -
Ssu4g1483 887 SMART LRR_typ_2 373 397 IPR003591 -
Ssu4g1483 887 SMART LRR_typ_2 85 108 IPR003591 -
Ssu4g1483 887 SMART LRR_typ_2 109 133 IPR003591 -
Ssu4g1483 887 SMART LRR_typ_2 446 469 IPR003591 -
Ssu4g1483 887 SMART LRR_typ_2 325 349 IPR003591 -
Ssu4g1483 887 SMART LRR_typ_2 205 229 IPR003591 -
Ssu4g1483 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Ssu4g1483 887 Gene3D Ribonuclease Inhibitor 414 514 IPR032675 -
Ssu4g1483 887 Pfam Leucine rich repeat 327 384 IPR001611 GO:0005515
Ssu4g1483 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Ssu4g1483 887 SUPERFAMILY L domain-like 56 223 - -
Ssu4g1483 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1483 887 Gene3D Ribonuclease Inhibitor 176 225 IPR032675 -
Ssu4g1483 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Ssu4g1483 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1483 Ssu-Chr4 24781021 24783972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1483 1 886 Receptor kinase-like Gene Family AT2G41820 72.216 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu4g1483 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1483 - - gmx:100789684 1646.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1483 4 24781021 24783972 Ssu4g1483 4 24781021 24783972 ECH