Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1480 ATGGGGACTCCGGAATTCCCAAATCTCGGCAAGCATTGTTCTGTTTCTGATTGCAAGCAGTTAGACTTCTTGCCCTTCACGTGCGATCGCTGTAATCAGGTATATTGTTCGGAGCACCGAGGTTATATTAAACATAAGTGCACAAAAGCCAACAAACTAGATGTCACTGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTTCGGCTGATTCCAGATCAAGACCCAAACATAACTTGGGACAATCATGTTAACGCTGATTGTGACCCATCAAATTATGCAAAAgccacaaagaaaaaaaaatgccccGCCCCCGGATGCAGAGAAGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCTTGAAAGACCATTGTTTGAAGCACCGGTTTGGCCACGATCACAAATGTTCAGGTCCCAAAAAGTTGGAGACAAGTTTTTCGTTCATGGGTCTTTTGAATAGGAGTAGAAAAGAGGAGTCAAGACCCAATTTAACTTCAACCGCGTCATCTAAGTGGACTTCAAGCTTTCTCAACGCGGCTTCTAATATTCGCGCCTCAGCTGAGGCGGGCATGTCGAAATTGAGCGATGAAATTAACCAAGTTTGGCAGGCAGCTAGGGATGGGACGGGACAGAGCAGTGGCAGTGGAAATAGAAATGATCAAATGGAGCAATGCCCTCAGTGTGGCGCAAAGTTTTCATCTGTGACTAATTTGGTGGATCATGTGCAAAATGTTCATGAAAGGAATGGCAACCGATTAGGGGTAAAGAAAGTCACGATTGATGCATGTCCTAAGTGTAGTAGGGGTTTTCTAGACCCGGTGTCCCTTGTGGAGCATGTTGAGAGGGAGCATGGAGGTAGTTCTGGAGCGTAg 876 0.4441 MGTPEFPNLGKHCSVSDCKQLDFLPFTCDRCNQVYCSEHRGYIKHKCTKANKLDVTVVICPLCAKGVRLIPDQDPNITWDNHVNADCDPSNYAKATKKKKCPAPGCREVLVFSNTIKCRDCLKDHCLKHRFGHDHKCSGPKKLETSFSFMGLLNRSRKEESRPNLTSTASSKWTSSFLNAASNIRASAEAGMSKLSDEINQVWQAARDGTGQSSGSGNRNDQMEQCPQCGAKFSSVTNLVDHVQNVHERNGNRLGVKKVTIDACPKCSRGFLDPVSLVEHVEREHGGSSGA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1480 291 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Ssu4g1480 291 SMART c2h2final6 262 285 IPR013087 -
Ssu4g1480 291 SMART c2h2final6 224 247 IPR013087 -
Ssu4g1480 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Ssu4g1480 291 Gene3D Classic Zinc Finger 194 289 - -
Ssu4g1480 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Ssu4g1480 291 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Ssu4g1480 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 290 - -
Ssu4g1480 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Ssu4g1480 291 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 290 - -
Ssu4g1480 291 Gene3D - 2 57 IPR035896 -
Ssu4g1480 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Ssu4g1480 291 Gene3D - 81 148 IPR035896 -
Ssu4g1480 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Ssu4g1480 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Ssu4g1480 291 Pfam C2H2-type zinc finger 225 247 - -
Ssu4g1480 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Ssu4g1480 291 SUPERFAMILY AN1-like Zinc finger 57 143 IPR035896 -
Ssu4g1480 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Ssu4g1480 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1480 Ssu-Chr4 24743250 24745024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1480 1 291 C2H2 Transcription Factor Family AT2G41835 60.410 2.18e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1480 zf-AN1 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1480 - - gmx:100806459 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1480 4 24743250 24745024 Ssu7g2824 7 59015748 59017523 PCT