Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1476 ATGGGGAACTGCTGCGCGACGCCGTCGACGGACGAGACGAAGACGCGGAaggggaagaagaaggagaaccCGTTCGCGATCGACTACGGGCTGAACAGCAACAGCAACAGCGCGAACGCGAACGGGCCGAGGCTGGTGGTTTTGAAGTCCCCGACGGGGCGCGAGATCGGGGCCCGCTACGAGCTGGGCCGCGAGCTGGGCCGGGGGGAGTTCGGGATAACGTACCTGTGCACGGACAAGGGGAGCGGGGAGGAGCTGGCGTGCAAGTCGATTTCGAAGAAGAAGCTCAGGACCGCGATCGACATCGAGGACGTGAGGAGGGAGGTGGAGATCATGAGGCACTTGCCCCAGCACCCCAACATCGTCACGTTGAAGGACACCTACGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTTTGCGAGGGCGGGGAGCTCTTCGATCGCATCGTCGCGCGTGGCCACTACACCGAACGCGCCGCCGCTTTCGTCACCAGAACCATCGTCCAAGTCGTTCAGatgtgCCACAAGCATGGTGTCATGCATCGGGATCTCAAGCCGGAGaactttttgtttgaaaataagaaggaaactGCGGTTCTGAAGGCTATAGATTTTGGGTTGTCAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTATTGAAGCGGAATTATGGGCCGGAAGTAGATATCTGGAGTGCTGGAGTAATTCTGTACATCCTACTTTGTGGTGTTCCACCATTCTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCCAAAGACCTTGTGAAGAAGATGCTAGATCCTGATCCAAGGCGACGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAGAATGCAAAGAAAGCTTCTAATGTTTCCTTAGGAGAAACTGTTAGAGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTAAGGGTGATTGCAGAGCATTTGACAGTAGAAGAAGCTGCTGGGCTAAAAGAGGGTTTCCAGGTTATGGATACAAACAACAGAGGCAAGATTAACATTGATGAACTACGAGTAGGGTTGCATAAACTAGGCCATCAAGTTCCTGAGGCTGATGTCCAAATGCTTATGGAAGCTGGTGATGTAGACAGGGATGGGCACCTAGATTATGGGGAGTTTGTAGCCATTTCTGTTCATCTAAGAAAGATGGGAAATGATGAGCATCTTCACAAAGCCTTCCAATTTTTTGATGGGAACCAAAGTGGGTATATTGAGATTGAGGAGCTGCGTAGCGCCTTATCTGATGAGGTTGACACAAACAGTGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACGGACAAGGATGGAAGGATAAGTTATGAGGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTACTCGCGAGAGAGGTTTGCGAGTCTCAGCCTGACCTTGATGAGGGACGGGTCATTGCATTTAAACAATGAAAAACAATGA 1611 0.4823 MGNCCATPSTDETKTRKGKKKENPFAIDYGLNSNSNSANANGPRLVVLKSPTGREIGARYELGRELGRGEFGITYLCTDKGSGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPQHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAFVTRTIVQVVQMCHKHGVMHRDLKPENFLFENKKETAVLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKASNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQVMDTNNRGKINIDELRVGLHKLGHQVPEADVQMLMEAGDVDRDGHLDYGEFVAISVHLRKMGNDEHLHKAFQFFDGNQSGYIEIEELRSALSDEVDTNSEEVINAIMHDVDTDKDGRISYEEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1476 536 Gene3D Transferase(Phosphotransferase) domain 1 146 327 - -
Ssu4g1476 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 11 515 - -
Ssu4g1476 536 CDD EFh 437 499 IPR002048 GO:0005509
Ssu4g1476 536 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Ssu4g1476 536 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1476 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 515 - -
Ssu4g1476 536 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1476 536 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Ssu4g1476 536 Pfam EF-hand domain pair 366 425 IPR002048 GO:0005509
Ssu4g1476 536 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Ssu4g1476 536 SUPERFAMILY EF-hand 347 524 IPR011992 -
Ssu4g1476 536 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Ssu4g1476 536 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1476 536 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Ssu4g1476 536 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Ssu4g1476 536 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Ssu4g1476 536 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g1476 536 CDD STKc_CAMK 59 317 - -
Ssu4g1476 536 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Ssu4g1476 536 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Ssu4g1476 536 SMART efh_1 473 501 IPR002048 GO:0005509
Ssu4g1476 536 SMART efh_1 437 465 IPR002048 GO:0005509
Ssu4g1476 536 SMART efh_1 365 393 IPR002048 GO:0005509
Ssu4g1476 536 SMART efh_1 401 429 IPR002048 GO:0005509
Ssu4g1476 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Ssu4g1476 536 Gene3D - 328 501 - -
Ssu4g1476 536 SUPERFAMILY Protein kinase-like (PK-like) 58 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1476 Ssu-Chr4 24660726 24664426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1476 1 534 EF-hand Containing Proteins AT5G19450 77.281 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu4g1476 Pkinase 1.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1476 K13412 - gmx:100790745 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1476 4 24660726 24664426 Ssu4g1476 4 24660726 24664426 ECH
Ssu4g1476 4 24660726 24664426 Ssu7g2821 7 58935265 58940376 PCT