Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1472 ATGCTTGAACAGGAGTGTCTTTTTAGATCACCATTGTTGCTATGTATTTTTGTTGGCTTCTTGCTACATCCTGTTGTGTCAACCGTGATACCGTTGGGTTCCAAACTTTCTGTGGTTGACAATAACTGTTGGGTTTCCTCCAATGGTGATTTTGCATTTGGGTTCTTTAACACTTCAGATGAACCTAACCAGTTTAGTGCTGGCATTCGTTTCAATTCAAAGTCTATACCATATGACCAACAAACAGTGGTCTGGGTTGCTGGAGCTCATGACAAAGTGAGTAACATGTCCTCTTTCCAACTCACTCCTGAAGGGGAACTGATCCTGTTTGATTCCTTACAAGGATCCACTGTATGGAGAAGTGGAACTGGCAACAGAGCTGTTGTTTCAGCTGCTCTTCATGATAATGGCAATCTTGTTCTGATAGACACAGCACAAAACATCACTTGGCAAAGTTTTGATACTCCATCTGATACACTCCTTCCAGGACAGAGTTTATCTGTTTGTCAGACACTTCGGCCTACAACCAAGAACCCCGTGACCAGTTACTACACTCTTTACATGAATGCTTCTGGTCAATTGCAGCTTTGCTGGgagagaaatattatatattggaCAGCTGAAAGCCCTGCTTCTGCATCAAATCTGACTGCATTTCTTACAACTGGTGGAGCTTTGCAACTTCGAGACCAAACTTTGAAAGCTGTTTGGAGTGCGTTTGGAGAAGACCATAATGATTCTGTGAACTACCGATTTCTTAGGCTAGATGTGGATGGCAATCTCCGCTTGTATTCATGGATTGAAGCTTCACAATCATGGAGATCAGTCTGGCAAGCTGTTGAGAATCAGTGCAAAGTCTTTGCAACATGTGGTCAGCGTGGTGTCTGTGTCTTCACTGCTTCAGGTTCTACTGATTGCAGATGCCCTTTTGAGGTAACCGAGTCTAACCAATGTTTGGTTCCATATGAACAGGAGTGTGAATCTGGATCCAATATGCTAAGATATAAGAACACATATCTGTATGGAATTTATCCTCCTGATGATTCAGTTGTCATAAGTAGTTTGCAGCAATGTGAGCAGTTGTGTCTGAATGACACGCAGTGTATGGTTGCAACCTTTTCCAACAATGGTAGACCACAATGCTCCATAAAGAAAACTAAGTATGTTACTGGCTATGCAGACCCATCTCTAAGCTCAATATCTTTTGTTAAAAGGTGTTCAGGTCCATTTGCTGTAAATCCTAGTCTCACAAAGTCACCTCCACCCAAACTGCCTCCTAGGATTTGTGTTCCTTGTCTAATCGGAGCAGCCTCAGGAACATTTTTCATCTTTGCTATCCTCCAGCTGGGAATTGTTTTCATCATCTTCAGAAGAAAAACCTCCACTGTGAGAAATGTCGCGTTAGCTTTCACAAGCCCAAATCCAAAGGGCTTAGTTGTGTTCTCCTTCTCAGAAATCAAGAGCCTCACTGGGGATCTCAAGGATCAAATTGGGCCAAATATGTTCAAGGGTGTGCTACCGAGCAATCGCCTGGTTGTGATTAAAGACCTGAATGCATCCATAGAAGAAAGGAAGTTCCGGAGTGCTGTTCTGAAGTTAGGCAACATCCACCACAAGAACCTTGTGAAGCTGGAGGGTTATTGTTGTGAGTTTAACCATAGATTTTTGGTGTATGAATATGCCAATAACAGTTCACTggataaatataaacatgattGTACCCTTTGCAAGAGGCTAACTTGGAGAAAGAGATTTGAAATATGCTCAAGTGTGGCAAAGGCCATTTGTTACTTGCACACTGGGTGTAGGGAGTTTGTGAGCCATGGGAATTTGAAATGTGAGAATGTCATGTTGGATGAAAATTCAGTGGCCAAGGTGTGTGAATATGGGTTTGCAATAGTGGATGGTGAGGCCACATATTGTGGCTTTTCAGCTGAGAAGGATGTAGGGGATTTTGGGAAGCTGGTGTTAACCTTGTTAACAGGGTGTGAAGATAATGAACAACTTTGTGAGTTGGCTTATACAGAATGGATGGAAGGGAGCGCAGTTAATGTGGTTGATAAAAGAATTGATGGTGTTGCCAATTCAGAGGAACTGGAACGTGCTTTAAGAATCTCATTCTGGTGCCTTCAAATGGATGAACGTACAAGACCTTCTATGGAGGAGGTAGTGAGAGTACTAGATGGTACACTGAACGTtgatccaccaccaccaccatttgTCTTGCACAGGCCGTTACAGGAAGATGATGATCCACAAGGAAATGGTTCAGAATAA 2277 0.4163 MLEQECLFRSPLLLCIFVGFLLHPVVSTVIPLGSKLSVVDNNCWVSSNGDFAFGFFNTSDEPNQFSAGIRFNSKSIPYDQQTVVWVAGAHDKVSNMSSFQLTPEGELILFDSLQGSTVWRSGTGNRAVVSAALHDNGNLVLIDTAQNITWQSFDTPSDTLLPGQSLSVCQTLRPTTKNPVTSYYTLYMNASGQLQLCWERNIIYWTAESPASASNLTAFLTTGGALQLRDQTLKAVWSAFGEDHNDSVNYRFLRLDVDGNLRLYSWIEASQSWRSVWQAVENQCKVFATCGQRGVCVFTASGSTDCRCPFEVTESNQCLVPYEQECESGSNMLRYKNTYLYGIYPPDDSVVISSLQQCEQLCLNDTQCMVATFSNNGRPQCSIKKTKYVTGYADPSLSSISFVKRCSGPFAVNPSLTKSPPPKLPPRICVPCLIGAASGTFFIFAILQLGIVFIIFRRKTSTVRNVALAFTSPNPKGLVVFSFSEIKSLTGDLKDQIGPNMFKGVLPSNRLVVIKDLNASIEERKFRSAVLKLGNIHHKNLVKLEGYCCEFNHRFLVYEYANNSSLDKYKHDCTLCKRLTWRKRFEICSSVAKAICYLHTGCREFVSHGNLKCENVMLDENSVAKVCEYGFAIVDGEATYCGFSAEKDVGDFGKLVLTLLTGCEDNEQLCELAYTEWMEGSAVNVVDKRIDGVANSEELERALRISFWCLQMDERTRPSMEEVVRVLDGTLNVDPPPPPFVLHRPLQEDDDPQGNGSE 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1472 758 PIRSF SRK 3 639 IPR024171 GO:0004674
Ssu4g1472 758 PIRSF SRK 637 758 IPR024171 GO:0004674
Ssu4g1472 758 ProSiteProfiles Protein kinase domain profile. 441 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1472 758 SMART blect_4 35 156 IPR001480 -
Ssu4g1472 758 Pfam Protein tyrosine and serine/threonine kinase 510 632 IPR001245 GO:0004672|GO:0006468
Ssu4g1472 758 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 8 754 - -
Ssu4g1472 758 SUPERFAMILY Protein kinase-like (PK-like) 502 727 IPR011009 -
Ssu4g1472 758 MobiDBLite consensus disorder prediction 729 758 - -
Ssu4g1472 758 SUPERFAMILY alpha-D-mannose-specific plant lectins 176 275 IPR036426 -
Ssu4g1472 758 Pfam D-mannose binding lectin 82 169 IPR001480 -
Ssu4g1472 758 Gene3D - 27 155 IPR036426 -
Ssu4g1472 758 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 205 IPR036426 -
Ssu4g1472 758 Gene3D Phosphorylase Kinase; domain 1 456 560 - -
Ssu4g1472 758 ProSiteProfiles Bulb-type lectin domain profile. 157 276 IPR001480 -
Ssu4g1472 758 Gene3D Transferase(Phosphotransferase) domain 1 562 734 - -
Ssu4g1472 758 ProSiteProfiles PAN/Apple domain profile. 326 406 IPR003609 -
Ssu4g1472 758 Pfam PAN domain 332 399 IPR003609 -
Ssu4g1472 758 ProSiteProfiles Bulb-type lectin domain profile. 29 154 IPR001480 -
Ssu4g1472 758 CDD B_lectin 45 156 IPR001480 -
Ssu4g1472 758 Pfam S-locus glycoprotein domain 245 308 IPR000858 GO:0048544
Ssu4g1472 758 PANTHER OS07G0415500 PROTEIN 8 754 - -
Ssu4g1472 758 SMART ntp_6 327 405 IPR003609 -
Ssu4g1472 758 Gene3D - 156 275 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1472 Ssu-Chr4 24557004 24559280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1472 481 757 Receptor kinase-like Gene Family AT4G05200 28.254 2.09e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu4g1472 PK_Tyr_Ser-Thr 6.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1472 - - gmx:100809478 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1472 4 24557004 24559280 Ssu4g1472 4 24557004 24559280 ECH