Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1471 ATGTGCTGTGAGTTGGAGCAGTTGAAGCTTGCACTGTCTCCATCTCCGTCGCCTATTTTGATACGCACATCTCAACCTAGAAGCCACGAGATGAATCACTTTTCTGTTGACACCGAAGATTCTTTTGCCAGCTTGCTTGAGCTTGCAGCCAATAACGATCTTGAGGGTTTTAAACGATTGATTGAGTGTGATCCTTCCTCCGTAGATGAGGTTGGGCTGTGGTATGGTCGCCGAAAGGGGTCAAAGCAGATGGTCAATGAGCAAAGGACTCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAACTGATTCTTTCTCTATCTGTGGCTGATGTCAACCGGCCTTGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCGGGCGGGGCTGAAAATGCCGTTGATGCTGTGAGACTGCTTCTAGAAGCAGGGGCTGATCGGAATTCTGTGGATGCCAACGGGCATCGTCCGGGAGATGTTATTGTTTTTCCTCCCAAGCTTGAACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAACTGATGATTCTATTGCTGGGTGTAATCTTAGGGTGATCACGACTTCATCCGACGCTTATTCGCCGCCTTTATCACCCTCACCAGAGATTGGATCTCCTTCTGCCCCAGATTTCCAGTTGAAGTTTAAGTCTAATGATGCCCCTGTTTCTTCTGCATCCGAGAAGAAAGAGTATCCTGTTGATCCATCTCTTCCGGACATCAAGAACAGCATATATTCAACTGATGAATTCCGGATGTATTCGTTCAAGGTTCGACCTTGTTCACGTGCTTATTCGCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCGAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTCCGGAAGGGCGCTTGCAGGCGAGGAGACATGTGTGAATATGCTCACGGGGTTTTTGAGTGCTGGTTGCACCCTGCACAATATCGAACCCGACTCTGCAAGGATGGGACAAATTGTTCCAGAAGGGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTATATGTTTCAACTGGTTCTGCTGTCCCTTCTCCTCGATCGAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCGATGTCAGTCATGTCTCCTTCACCATTCACTCCGCCCATGTCACCTTCCGCCAATGGCGTTTCACACCCTTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCAGGAAGTAATTTTCAGTCCAGTCGTTTGCGATCTTCACTCAATGCTAGAGATATTCCTGtggatgattttgattatgatcAGCAGCAACAGCTCCTTAATGAGTTATCATGCCTCTCTCCACAGCCTATAAATTCTAATACTCTAAACCGCTCTGGTCGCATGAAACCCCTAACTCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGACCCAACATTGACTTCAGCTGTATTTTCTCCAACTCACAAATCAGCTGTCCTCAATCAGTTTCAGCAGCAGCAAAGCTTGTTGGCACCAGTGAAtacaaatttttcttctaaaaatgttGAGCATCCTTTATTGCAGGCCTCATTTGGGGTTCAGTCATCAGGAAGAATGTCTCCGCGAAACGTGGAACCTATTTCTCCAATGGGTTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAACAATTTCGCAGCTTAAGCTCCCGGGAACTCGGCTCCAACTCTGCTGTTGCTGCTGCAGCTGCAGCTGCAGCCTCTGCCAATTCTTGGTCAAAATGGGGATCGCCCAATGGTAATTTGGATTGGCTAGTTGGTGCTGATGAAGTAGGTAAGCTCCGTAGGTCGTCTTCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTATCGTGGGTGCAGTCGCTTGTTAAAGAATCACCAActgaaattaaagataaattggCAACTACTGTGTCAAATGTTGCAGCAGCTGGATCCTCCAATGAGGGATCAAACAATGGCACACAAATGGAGTCTGTTGATCATGCTGTACTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2181 0.4626 MCCELEQLKLALSPSPSPILIRTSQPRSHEMNHFSVDTEDSFASLLELAANNDLEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSVADVNRPCGLDKSTALHCAASGGAENAVDAVRLLLEAGADRNSVDANGHRPGDVIVFPPKLEHVKNSLEELLQTDDSIAGCNLRVITTSSDAYSPPLSPSPEIGSPSAPDFQLKFKSNDAPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGVSHPSVAWPQPNIPALHLPGSNFQSSRLRSSLNARDIPVDDFDYDQQQQLLNELSCLSPQPINSNTLNRSGRMKPLTPSNLDDLFSAESSSPRYDPTLTSAVFSPTHKSAVLNQFQQQQSLLAPVNTNFSSKNVEHPLLQASFGVQSSGRMSPRNVEPISPMGSRISMLAQREKQQFRSLSSRELGSNSAVAAAAAAAASANSWSKWGSPNGNLDWLVGADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKDKLATTVSNVAAAGSSNEGSNNGTQMESVDHAVLGAWLEQMQLDHLVAQQN 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1471 726 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Ssu4g1471 726 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 31 723 - -
Ssu4g1471 726 SMART ANK_2a 40 70 IPR002110 GO:0005515
Ssu4g1471 726 SMART ANK_2a 122 154 IPR002110 GO:0005515
Ssu4g1471 726 SMART ANK_2a 87 117 IPR002110 GO:0005515
Ssu4g1471 726 Gene3D - 301 363 - -
Ssu4g1471 726 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Ssu4g1471 726 PANTHER UNKEMPT FAMILY MEMBER 31 723 IPR045234 -
Ssu4g1471 726 MobiDBLite consensus disorder prediction 400 420 - -
Ssu4g1471 726 MobiDBLite consensus disorder prediction 203 244 - -
Ssu4g1471 726 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Ssu4g1471 726 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Ssu4g1471 726 SUPERFAMILY Ankyrin repeat 42 171 IPR036770 -
Ssu4g1471 726 Pfam Ankyrin repeats (3 copies) 48 154 IPR002110 GO:0005515
Ssu4g1471 726 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 325 IPR000571 GO:0046872
Ssu4g1471 726 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Ssu4g1471 726 Gene3D - 38 181 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1471 Ssu-Chr4 24481456 24483636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1471 35 719 C2H2 Transcription Factor Family AT5G12850 53.182 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu4g1471 Ank_2 2.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1471 - - ccaj:109796653 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1471 4 24481456 24483636 Ssu4g1471 4 24481456 24483636 ECH