Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1467 ATGGATGATTCAGGCGATGAGCATGTTATGGGATACAAGCATGAAACGCAAATTGGTATAGAATATGTGCATGTTATGCAACCAGTTGCAAGGGATAAAGCTGTAGATGATACTGTTAATGGTTGTGGAGCAGAGATATCAAGTGATAGGGATGGTTATCACAATGAATCAATTGATCTTGCATCCAAAAAGCTTGAATTCTTGAGCTCTCAGTGCACATTTGCTGATGATTTCTCAGAATGTACTGAGCAGACAGAAAACAATCTTTGTAAGTGTGATGAAGATGGTCAATTTCTGCAAACCCCAAGCAATCCCTCAGCCAAGACAAATGCAATTTCATGGACAACTGAGGAGGAGGAGTCGTTCAGGCGCCTTACATGCAGTTCCAAGTATCACCAAGCAGTGATACTCCCAGCACCACCTTCCCTTGTTCAAAGTTCAACTATCCAAGTATCAACCATGGATACTTGCAAGAAATCCCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGGAAAGGTGGCCCCCAGAATGCCTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCGTGGCTTATGATGAGGCTGCAAGGAGACTCTATGGTCCAGATGCATACCTTAATCTTCCCCACCTGCAACCCAGTTCCGCTTCACCTATCACATCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGttcatttaatccatcaaaGGCTACAAGAGCTTAAGCGAAATTCAGTTGTAAGTCAATCCCCATCTAGTTCATCCAATGATCCAAAGGCAGAAATTCAGAATGTAGACAGCAAAAATCATGGAGAAAATCCTCCAAAAGATGCTCAAACATCATCACAGGAGGTGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGACTACTGAAAGAAGAAAGACAGTCGGAAAGAACCGATAGCTCGGGAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATCAATTGGGAGTGTTTTCTGACAATAGTATTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTCAGGAATCAGAAGCCACCCAGCTTGAAGCATATGACCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 1302 0.4347 MDDSGDEHVMGYKHETQIGIEYVHVMQPVARDKAVDDTVNGCGAEISSDRDGYHNESIDLASKKLEFLSSQCTFADDFSECTEQTENNLCKCDEDGQFLQTPSNPSAKTNAISWTTEEEESFRRLTCSSKYHQAVILPAPPSLVQSSTIQVSTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAVAYDEAARRLYGPDAYLNLPHLQPSSASPITSGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSPSSSSNDPKAEIQNVDSKNHGENPPKDAQTSSQEVLGDLQEKPQIDLHEFLQQLGLLKEERQSERTDSSGSSTVPEAVLRDDNDQLGVFSDNSINWEALIEMHGIAGIQESEATQLEAYDPNDDLTFSTSIWNF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1467 433 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Ssu4g1467 433 PRINTS Ethylene responsive element binding protein signature 205 221 IPR001471 GO:0003700|GO:0006355
Ssu4g1467 433 MobiDBLite consensus disorder prediction 357 378 - -
Ssu4g1467 433 MobiDBLite consensus disorder prediction 160 181 - -
Ssu4g1467 433 CDD AP2 181 241 IPR001471 GO:0003700|GO:0006355
Ssu4g1467 433 MobiDBLite consensus disorder prediction 293 311 - -
Ssu4g1467 433 ProSiteProfiles AP2/ERF domain profile. 182 239 IPR001471 GO:0003700|GO:0006355
Ssu4g1467 433 MobiDBLite consensus disorder prediction 293 333 - -
Ssu4g1467 433 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 154 430 - -
Ssu4g1467 433 Pfam AP2 domain 181 231 IPR001471 GO:0003700|GO:0006355
Ssu4g1467 433 SUPERFAMILY DNA-binding domain 182 240 IPR016177 GO:0003677
Ssu4g1467 433 Gene3D AP2/ERF domain 182 240 IPR036955 GO:0003700|GO:0006355
Ssu4g1467 433 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 154 430 - -
Ssu4g1467 433 SMART rav1_2 182 245 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1467 Ssu-Chr4 24423913 24430126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1467 158 433 AP2-EREBP Transcription Factor Family AT3G57600 53.381 3.09e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g1467 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1467 - - gmx:100801311 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1467 4 24423913 24430126 Ssu4g1467 4 24423913 24430126 ECH
Ssu4g1467 4 24423913 24430126 Ssu7g2805 7 58399796 58400668 PCT