Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1466 ATGGCAACGGGGAGTAAGAAGAAGGCATCCCCTCTCTCTTTGCAGCAATTCATCTCTATTACTGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATCGCCACTGGCGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCAcgatgttgttgttttaaaactCAACAAGTCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTAGTTTACAGATTAAAGGACTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGACGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCGGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTGTCCTTCACTCCCTTTAATATCAATCTTGATCACTCTCAGAAAGAAGCAGTTTCGAAAGCTCTATCATCAAAGAATGTGTTCTTGCTGCATGGACCACCTGGAACAGGAAAAACCACGACAGTTgtagaaattatattacaagaagTGAAACATGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACAtagAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTCTGTTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTATTACGAGGAGACAATAGTGGTCTTGCAAATGACATTAGGAAAGAAATGAAGACATTGAACGGAAAGCTGCTGAAAACCAAAGACAGAAATACGAGAAAGGACATACAAAAGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGAtgtaattttaactactttGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACAATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGTGATGAAATCACATCAATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCGAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCACATATGTTATATGATCTTGAGGGTGTGAAGCAGACATCTTCAACTGAACCGACCCTTCTTCTCATAGACACAGCTGGGTGTGAtatggaagaaaagaaagatgaagaagatAGCACCTTTAATGAAGGTGAAGCTGAGGTTACCGTGGCTCATGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAGAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACGGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCACTATTATATCAATGGTTcgatcaaattcaaaaaaagagGTTGGCTTTCTAAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGCGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1941 0.4147 MATGSKKKASPLSLQQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKSDLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSFTPFNINLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKHGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKTLNGKLLKTKDRNTRKDIQKELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKQTSSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEATIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1466 646 Gene3D - 23 426 IPR027417 -
Ssu4g1466 646 SMART AAA_5 210 462 IPR003593 -
Ssu4g1466 646 Gene3D - 40 142 - -
Ssu4g1466 646 TIGRFAM TIGR00376: putative DNA helicase 344 639 IPR004483 GO:0003677|GO:0005524
Ssu4g1466 646 PANTHER HELICASE WITH ZINC FINGER 2 10 644 - -
Ssu4g1466 646 Coils Coil 297 317 - -
Ssu4g1466 646 Pfam AAA domain 419 615 IPR041679 -
Ssu4g1466 646 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 644 - -
Ssu4g1466 646 Gene3D - 442 646 IPR027417 -
Ssu4g1466 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 632 IPR027417 -
Ssu4g1466 646 CDD DEXXQc_SMUBP2 195 443 - -
Ssu4g1466 646 Pfam AAA domain 196 410 IPR041677 GO:0004386
Ssu4g1466 646 SMART ultradead3 192 443 IPR014001 -
Ssu4g1466 646 CDD SF1_C_Upf1 444 632 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1466 Ssu-Chr4 24411138 24421146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1466 169 379 Core DNA Replication Machinery Family AT1G08840 25.592 6.91e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1466 K19036 - gmx:100810545 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1466 4 24411138 24421146 Ssu4g1466 4 24411138 24421146 ECH