Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1459 ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCAGGCTTCTTCCGTTTCAACCACCATTTCCCATCTTCAAACCCTTCCCCACACGCTCCCTATGTCCACCACAACTTCGTCAACCACACCAAAACCAACGACACCACCTTTTTCCACTACCACCAcggcacaacaacaacaacagctaCTACTTTTTCTTCCTCGCCACCTTCCCCTCCTCTGAGAGAAGAACTCCCCCTCTTGAGGCTGAGCCCAGCAAAgcaagaggaggaggaggaggaggaggaggaggacaTGTCTTGCACCGGAGGCATGGATGTGGAGGAGAGGATCCACATCCACCCcaaagaggaagagaatgacGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCCGAGATGGCTTCTGTGCTCTCTTCTTCCTCAGAGATCACTGACAAAGAACATGGAGATGGTGCTGCTGAGGATTCTTCTGCAGCCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGcagATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACAGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCCGGGTGCAGGAACAACATTGACCACCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCTGTGAGGGGGGATTGGAGAACCCATGAAAAGAACTGTGGCAAGCTTTGGTACTGTATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTCAAAGACCATATTAAGGCTTTTGGGAGTGGCCATGCAGCTTATGGGATCGATGGATTCGAAGAAGAAGATGAGCCAGCATCCGAAGTAGAGCAAGATAATGATTCCACCCATTAA 1053 0.4606 MADPYSNFFSSSGFFRFNHHFPSSNPSPHAPYVHHNFVNHTKTNDTTFFHYHHGTTTTTATTFSSSPPSPPLREELPLLRLSPAKQEEEEEEEEEDMSCTGGMDVEERIHIHPKEEENDEDGTVTVALHIGLPSPSAAEMASVLSSSSEITDKEHGDGAAEDSSAAFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1459 350 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 349 - -
Ssu4g1459 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 293 IPR013087 -
Ssu4g1459 350 MobiDBLite consensus disorder prediction 59 100 - -
Ssu4g1459 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Ssu4g1459 350 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Ssu4g1459 350 SMART c2h2final6 189 211 IPR013087 -
Ssu4g1459 350 SMART c2h2final6 273 293 IPR013087 -
Ssu4g1459 350 Gene3D Classic Zinc Finger 251 326 - -
Ssu4g1459 350 Gene3D Classic Zinc Finger 188 211 - -
Ssu4g1459 350 SUPERFAMILY beta-beta-alpha zinc fingers 255 293 IPR036236 -
Ssu4g1459 350 PANTHER ZINC FINGER PROTEIN WIP2 1 349 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1459 Ssu-Chr4 24286667 24289027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1459 1 347 C2H2 Transcription Factor Family AT3G57670 62.760 7.73e-148 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1459 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1459 - - gmx:100802907 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1459 4 24286667 24289027 Ssu4g1459 4 24286667 24289027 ECH
Ssu4g1459 4 24286667 24289027 Ssu8g0409 8 6581388 6583438 ECH
Ssu4g1459 4 24286667 24289027 Ssu3g2697 3 80800557 80802761 ECH
Ssu4g1459 4 24286667 24289027 Ssu7g2797 7 58164444 58166846 PCT