Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1457 ATGGAGACAGAGAACGGTGACACGAGGTCCAAAAAGATGGAAGACTATGAAGTGATAGAACAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTTACAGGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTTATTGCAAAACTGAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGgaGGACCATATATGCATTATAACTGGCTATTGTGAAGGCGGTGACATGGCCGAGAACGTAAAGAAAGCTAGAGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGATCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCAGATATGGCTGGacttatcaataaaataaacagaTCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGTATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGCTGTCATAATGCATCATCTAATTTTCTTCCAGTATATCCCTTAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGAACAAAGAAGCAGGATTAGCAAATTGTTTGGAACGGGTTCATCCAATTGAGGGAAATGGAGATATAAAGATAAGCAATCTTCCTAATGATGCAGTAACAATCTCAACGAGTACAGAAGACAATCTTGAGACCAGGATGGATGATCTTACCAGCTACATAGTGGACTCTTCTACTAGTATTAGTGGCTCAAAAGATGGTTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTCAAAAGTAGACCTGCAAGGGAAATAGCTAACAATGACATCTCTTCAAAGAGTACACAAGATTCTCTGcatgaagaagaaggattttCTGCTAAACATTCTCATAAATTAGAAGGAGATGACATAAATGCGGTGACCACAGAAGTTGAAGATGCTTCTTGCAATGAAGGTTTGGATAATGCTGAAGCACAGAAGGAAGATGCAAACCTTGACGACTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGACAAGTCCATTAATGAGGAAAGGTCGTCACTAATTGTGCTTCAAAATGACACTGTATTTACGGAAGGCTCACATATGAACTGTTTGACATCTGATAGTAATGATGCACTTCCGGTTAAGGATGATGACATAGCAAACAAACACATTCTTTGCTCCACGCATAAAGACAATGATAATGCAGTGGAGGTTGATCGGACACTGAGTGGCGTTTCATTGAGTGTAATAACTGATGTAGGCGATGATGAAACAATCAAGACTGTGTTGGATAGTCCTTGTCAGCAAAGAGCTGATGCTCTGGAATCTCTTCTTGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTCGAAGAGCTTGCTGGGGTGCTAAAACCATTTGGGAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGGCAAAGAGCCTCATCTCTGCCCAAAAATTTAATCCTGAAACCTAG 1899 0.4049 METENGDTRSKKMEDYEVIEQIGRGAFGSAFLVLYRSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENVKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNFLPVYPLVNSKDKTRRSNKSSGGKDHKNKEAGLANCLERVHPIEGNGDIKISNLPNDAVTISTSTEDNLETRMDDLTSYIVDSSTSISGSKDGSTTSESTICSVCKEDFKSRPAREIANNDISSKSTQDSLHEEEGFSAKHSHKLEGDDINAVTTEVEDASCNEGLDNAEAQKEDANLDDSGKSTMSSAGSSSTDKDKSINEERSSLIVLQNDTVFTEGSHMNCLTSDSNDALPVKDDDIANKHILCSTHKDNDNAVEVDRTLSGVSLSVITDVGDDETIKTVLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLKPFGKEAVSSRETAIWLAKSLISAQKFNPET 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1457 632 MobiDBLite consensus disorder prediction 295 314 - -
Ssu4g1457 632 SUPERFAMILY Protein kinase-like (PK-like) 13 299 IPR011009 -
Ssu4g1457 632 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Ssu4g1457 632 MobiDBLite consensus disorder prediction 464 478 - -
Ssu4g1457 632 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1457 632 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 486 - -
Ssu4g1457 632 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 494 615 - -
Ssu4g1457 632 MobiDBLite consensus disorder prediction 410 432 - -
Ssu4g1457 632 MobiDBLite consensus disorder prediction 399 432 - -
Ssu4g1457 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Ssu4g1457 632 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 486 - -
Ssu4g1457 632 MobiDBLite consensus disorder prediction 455 485 - -
Ssu4g1457 632 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Ssu4g1457 632 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1457 632 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 494 615 - -
Ssu4g1457 632 CDD STKc_Nek 15 270 - -
Ssu4g1457 632 Gene3D Transferase(Phosphotransferase) domain 1 98 322 - -
Ssu4g1457 632 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1457 Ssu-Chr4 24244934 24250372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1457 9 271 MAP Kinase Kinase Kinase AT3G13530 32.075 2.81e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu4g1457 Pkinase 3.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1457 K08857 - gmx:100793379 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1457 4 24244934 24250372 Ssu4g1457 4 24244934 24250372 ECH
Ssu4g1457 4 24244934 24250372 Ssu7g2792 7 58038737 58047197 PCT