Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1456 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAAGAAACGGAAGCGCAGCATGATCAAACCAGCCTCTACCAGGTTCTCGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTCCATCCTGATAAAAACCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAACTGCAAAAAGTGATCTCGATTCTCGGGGATGAAGAGAAGCGGGCCCTCTATGATCAGACTGGTTGTGTTGATGATGATGACCTTGCTGGAGATGTTGTTCGGAATCTTCAAGAGTTCTTCAGAGCAATGTACAAGAAgGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCAGAGAAAaatgatttgattgatttgtACAAGAAATGCAAGGGTAATATGAGTAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACATCGATTCAAGGATATTCTTGATGAGGCTGTAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGACGTATCTGAAACCAAACCGCCCACAAGTCCTTTGAGGAGGGAAAAGTCAAATAAGCAGTCAGAAGCAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGCGGTGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTGCACGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAAATCGAAGCAATCAAAGCGGAAGtaa 831 0.4392 MAQKKKARVSDDEETEAQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDDDLAGDVVRNLQEFFRAMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMSRLFCSMLCSDPKLDSHRFKDILDEAVAAGELKATKAYQKWAKDVSETKPPTSPLRREKSNKQSEADLCAIIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEAARRKLETGRSSKKSKQSKRK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1456 276 MobiDBLite consensus disorder prediction 189 210 - -
Ssu4g1456 276 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Ssu4g1456 276 MobiDBLite consensus disorder prediction 251 268 - -
Ssu4g1456 276 Gene3D DnaJ domain 7 98 IPR036869 -
Ssu4g1456 276 MobiDBLite consensus disorder prediction 238 276 - -
Ssu4g1456 276 Pfam DnaJ domain 24 85 IPR001623 -
Ssu4g1456 276 MobiDBLite consensus disorder prediction 1 19 - -
Ssu4g1456 276 SUPERFAMILY Chaperone J-domain 20 95 IPR036869 -
Ssu4g1456 276 SMART dnaj_3 22 80 IPR001623 -
Ssu4g1456 276 CDD DnaJ 25 77 IPR001623 -
Ssu4g1456 276 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 272 - -
Ssu4g1456 276 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 272 IPR042977 -
Ssu4g1456 276 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g1456 276 PRINTS DnaJ domain signature 80 99 IPR001623 -
Ssu4g1456 276 PRINTS DnaJ domain signature 43 58 IPR001623 -
Ssu4g1456 276 PRINTS DnaJ domain signature 60 80 IPR001623 -
Ssu4g1456 276 PRINTS DnaJ domain signature 25 43 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1456 Ssu-Chr4 24238473 24241068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1456 25 85 C2H2 Transcription Factor Family AT1G74250 39.394 5.17e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1456 K09529 - gmx:100793909 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1456 4 24238473 24241068 Ssu7g2791 7 58014569 58017404 PCT