Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1454 ATGGAGTCTCACGATGAGACTGGATGCCAGGCTCCCGAACGTTCCATTCTTTGCATTAATAATTGTGGATTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGTTGTTGAAGCAGGAGCAGGACAAACTTGCAGCATCGTCTGTTGAAAACATTGTGAATGGTAGTTCCAATGGCAATGGAAAGCAGGCTGTGACTACAGGTGCTGTTGGTGTACAAGTTGGAACCGTGGAGGCCAAGACTGTCTGTGCTCAGAGTTCTGCAGATTCGTGCTCTGGTGAGAGTTTGGAGATGAGAGCCAAGGCTGGTCCTAGTAGATGTGCCACATGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCATTTGACTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCAGTAATTAAGGCAGATAAGCTTGACAAAATCTAG 519 0.4644 MESHDETGCQAPERSILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGSSNGNGKQAVTTGAVGVQVGTVEAKTVCAQSSADSCSGESLEMRAKAGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPVIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1454 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Ssu4g1454 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Ssu4g1454 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Ssu4g1454 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 55 - -
Ssu4g1454 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Ssu4g1454 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Ssu4g1454 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Ssu4g1454 172 Gene3D - 86 168 IPR035896 -
Ssu4g1454 172 SUPERFAMILY AN1-like Zinc finger 105 167 IPR035896 -
Ssu4g1454 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Ssu4g1454 172 Gene3D - 1 63 - -
Ssu4g1454 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1454 Ssu-Chr4 24211663 24212181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1454 5 172 C2H2 Transcription Factor Family AT3G52800 42.012 2.44e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1454 - - gmx:100499995 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1454 4 24211663 24212181 Ssu4g1454 4 24211663 24212181 ECH
Ssu4g1454 4 24211663 24212181 Ssu8g0407 8 6557469 6557984 ECH
Ssu4g1454 4 24211663 24212181 Ssu3g2701 3 80852420 80852938 ECH