Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g1452 | ATGGGGAGCAACTTGCTTTCAGGTAGTGTACCTTCTGTCTTTGGGAATCTAACGAAACTTGAAGTCCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATTGGTGCGCTTGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAGATTCTCTGGTGGGGCTGCTCAGTTTGACCCATTTAGATCTCTCTGGGAACAACCTTACAGGTGGGGTTCCTAAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATATTTCACAAAACAAGCTTCTGGGGCCATTTCCAAATGGCATCTGCAAAGGACAAGGCCTTATAAACCTCAGTCTCCATTCTAATACCTTCAATGGTTCAATACCCAACTCCATTGGTGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGGTTTATCTGGAGATTTCCCCACTGCATTGTGGTCATTACCCAAAATTAAGCTCATCAGAGCTGAAAACAACAGATTCTCAGGCCTGATACCTGAGTCAATATCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTTGCTGGTAAAATCCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCTTCTATTAACCGTTTCGATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATCCCAGAACTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGATAACAGTCTAACAGGAGAAATACCCCCTTCCCTTGCTGAGCTACCTGTGCTTACTTACCTTGAACTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTATCCTTCAATCAACTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCCAACCCTTGTTCTGATGACATGCCAAGACATCACATTGGTAGCCTTACAACCTTAACATGTGCCCTTATCTCTTTAGCCTTTGTTGCTGGAACTGCCATTGTGGTTGGTGGATTTATATTGTATAGGAGATCTTGCAAGGGGAATCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTCAGAATTACTGAGCATGATCTGCTTATAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGGGTTTTTGGTAAAGTTTATGTTGTGAGTCTACCCAGTGGTGAACTAGTAGCTGTGAAGAAGTTGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAGATTAGGCATAAGAATGTTGTGAAAATTCTGGGGTTCTGCCACTCTGATGAGTCAGTGTTTCTCATTTATGAGTACCTGCATGGAGGGAGCTTAGGGGATTTGATATCTCGTCAGAATTTTCAGTTGCAGTGGGGAATTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAgtcaagtaacattttgttggATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTCTGGGAGAAGCTGCATTTCAATCAATCTTGAATTCTGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGTGTGGTATTGCTAGAGCTAGTGAGTGGCAGGCAAGCAGAGCAAACAGAGTCAAGTGACTCACTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAATATCACTAATGGGTTGCATCAAGTTCTTGACCCTAAAATATCACCTACTTGTCACCAAGAAATGATTGGAGCTTTAGATATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGCAAGAAGTTGTTAGAGGCCTTCAGTCCCTGGAGTCAAAAACTTGCATTGCAAATTTGCATGAACCAAATGAGGAACCCTCCACTCCAGTCTGA | 2136 | 0.4204 | MGSNLLSGSVPSVFGNLTKLEVLDLSQNPYLVSEIPEDIGALGNLKQLLLQSSSFQGEIPDSLVGLLSLTHLDLSGNNLTGGVPKALPSSLKNLVSLDISQNKLLGPFPNGICKGQGLINLSLHSNTFNGSIPNSIGECKSLERFQVQNNGLSGDFPTALWSLPKIKLIRAENNRFSGLIPESISGAVQLEQVQLDNNSFAGKIPQGLGLVKSLYRFSASINRFDGELPPNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLELSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNPCSDDMPRHHIGSLTTLTCALISLAFVAGTAIVVGGFILYRRSCKGNQVGVWRSVFFYPLRITEHDLLIGMNEKSSMGNGGVFGKVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQNFQLQWGIRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVLGEAAFQSILNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEQTESSDSLDIVKWVRRKVNITNGLHQVLDPKISPTCHQEMIGALDIALRCTSVVPEKRPSMQEVVRGLQSLESKTCIANLHEPNEEPSTPV | 711 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g1452 | 711 | Pfam | Leucine Rich Repeat | 285 | 306 | IPR001611 | GO:0005515 | |
Ssu4g1452 | 711 | PRINTS | Leucine-rich repeat signature | 69 | 82 | - | - | |
Ssu4g1452 | 711 | PRINTS | Leucine-rich repeat signature | 91 | 104 | - | - | |
Ssu4g1452 | 711 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 1 | 699 | - | - | |
Ssu4g1452 | 711 | PANTHER | OSJNBB0022F23.6 PROTEIN | 1 | 699 | - | - | |
Ssu4g1452 | 711 | SMART | LRR_typ_2 | 66 | 89 | IPR003591 | - | |
Ssu4g1452 | 711 | SMART | LRR_typ_2 | 91 | 115 | IPR003591 | - | |
Ssu4g1452 | 711 | SMART | LRR_typ_2 | 17 | 42 | IPR003591 | - | |
Ssu4g1452 | 711 | SMART | LRR_typ_2 | 282 | 305 | IPR003591 | - | |
Ssu4g1452 | 711 | ProSiteProfiles | Protein kinase domain profile. | 420 | 691 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu4g1452 | 711 | SUPERFAMILY | RNI-like | 3 | 329 | - | - | |
Ssu4g1452 | 711 | CDD | STKc_IRAK | 425 | 691 | - | - | |
Ssu4g1452 | 711 | Gene3D | Ribonuclease Inhibitor | 1 | 87 | IPR032675 | - | |
Ssu4g1452 | 711 | Pfam | Protein kinase domain | 421 | 685 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu4g1452 | 711 | Pfam | Leucine Rich repeats (2 copies) | 68 | 108 | IPR025875 | - | |
Ssu4g1452 | 711 | Gene3D | Ribonuclease Inhibitor | 88 | 353 | IPR032675 | - | |
Ssu4g1452 | 711 | Gene3D | Transferase(Phosphotransferase) domain 1 | 496 | 705 | - | - | |
Ssu4g1452 | 711 | SUPERFAMILY | Protein kinase-like (PK-like) | 428 | 687 | IPR011009 | - | |
Ssu4g1452 | 711 | Gene3D | Phosphorylase Kinase; domain 1 | 414 | 495 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g1452 | Ssu-Chr4 | 24184423 | 24187120 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g1452 | 1 | 691 | Receptor kinase-like Gene Family | AT5G06940 | 64.943 | 0.0 | 883 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Ssu4g1452 | Pkinase | 1.7e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g1452 | - | - | gmx:100794428 | 1282.7 |