Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1452 ATGGGGAGCAACTTGCTTTCAGGTAGTGTACCTTCTGTCTTTGGGAATCTAACGAAACTTGAAGTCCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATTGGTGCGCTTGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAGATTCTCTGGTGGGGCTGCTCAGTTTGACCCATTTAGATCTCTCTGGGAACAACCTTACAGGTGGGGTTCCTAAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATATTTCACAAAACAAGCTTCTGGGGCCATTTCCAAATGGCATCTGCAAAGGACAAGGCCTTATAAACCTCAGTCTCCATTCTAATACCTTCAATGGTTCAATACCCAACTCCATTGGTGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGGTTTATCTGGAGATTTCCCCACTGCATTGTGGTCATTACCCAAAATTAAGCTCATCAGAGCTGAAAACAACAGATTCTCAGGCCTGATACCTGAGTCAATATCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTTGCTGGTAAAATCCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCTTCTATTAACCGTTTCGATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATCCCAGAACTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGATAACAGTCTAACAGGAGAAATACCCCCTTCCCTTGCTGAGCTACCTGTGCTTACTTACCTTGAACTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTATCCTTCAATCAACTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCCAACCCTTGTTCTGATGACATGCCAAGACATCACATTGGTAGCCTTACAACCTTAACATGTGCCCTTATCTCTTTAGCCTTTGTTGCTGGAACTGCCATTGTGGTTGGTGGATTTATATTGTATAGGAGATCTTGCAAGGGGAATCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTCAGAATTACTGAGCATGATCTGCTTATAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGGGTTTTTGGTAAAGTTTATGTTGTGAGTCTACCCAGTGGTGAACTAGTAGCTGTGAAGAAGTTGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAGATTAGGCATAAGAATGTTGTGAAAATTCTGGGGTTCTGCCACTCTGATGAGTCAGTGTTTCTCATTTATGAGTACCTGCATGGAGGGAGCTTAGGGGATTTGATATCTCGTCAGAATTTTCAGTTGCAGTGGGGAATTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAgtcaagtaacattttgttggATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTCTGGGAGAAGCTGCATTTCAATCAATCTTGAATTCTGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGTGTGGTATTGCTAGAGCTAGTGAGTGGCAGGCAAGCAGAGCAAACAGAGTCAAGTGACTCACTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAATATCACTAATGGGTTGCATCAAGTTCTTGACCCTAAAATATCACCTACTTGTCACCAAGAAATGATTGGAGCTTTAGATATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGCAAGAAGTTGTTAGAGGCCTTCAGTCCCTGGAGTCAAAAACTTGCATTGCAAATTTGCATGAACCAAATGAGGAACCCTCCACTCCAGTCTGA 2136 0.4204 MGSNLLSGSVPSVFGNLTKLEVLDLSQNPYLVSEIPEDIGALGNLKQLLLQSSSFQGEIPDSLVGLLSLTHLDLSGNNLTGGVPKALPSSLKNLVSLDISQNKLLGPFPNGICKGQGLINLSLHSNTFNGSIPNSIGECKSLERFQVQNNGLSGDFPTALWSLPKIKLIRAENNRFSGLIPESISGAVQLEQVQLDNNSFAGKIPQGLGLVKSLYRFSASINRFDGELPPNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLELSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNPCSDDMPRHHIGSLTTLTCALISLAFVAGTAIVVGGFILYRRSCKGNQVGVWRSVFFYPLRITEHDLLIGMNEKSSMGNGGVFGKVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQNFQLQWGIRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVLGEAAFQSILNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEQTESSDSLDIVKWVRRKVNITNGLHQVLDPKISPTCHQEMIGALDIALRCTSVVPEKRPSMQEVVRGLQSLESKTCIANLHEPNEEPSTPV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1452 711 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515
Ssu4g1452 711 PRINTS Leucine-rich repeat signature 69 82 - -
Ssu4g1452 711 PRINTS Leucine-rich repeat signature 91 104 - -
Ssu4g1452 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 699 - -
Ssu4g1452 711 PANTHER OSJNBB0022F23.6 PROTEIN 1 699 - -
Ssu4g1452 711 SMART LRR_typ_2 66 89 IPR003591 -
Ssu4g1452 711 SMART LRR_typ_2 91 115 IPR003591 -
Ssu4g1452 711 SMART LRR_typ_2 17 42 IPR003591 -
Ssu4g1452 711 SMART LRR_typ_2 282 305 IPR003591 -
Ssu4g1452 711 ProSiteProfiles Protein kinase domain profile. 420 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1452 711 SUPERFAMILY RNI-like 3 329 - -
Ssu4g1452 711 CDD STKc_IRAK 425 691 - -
Ssu4g1452 711 Gene3D Ribonuclease Inhibitor 1 87 IPR032675 -
Ssu4g1452 711 Pfam Protein kinase domain 421 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1452 711 Pfam Leucine Rich repeats (2 copies) 68 108 IPR025875 -
Ssu4g1452 711 Gene3D Ribonuclease Inhibitor 88 353 IPR032675 -
Ssu4g1452 711 Gene3D Transferase(Phosphotransferase) domain 1 496 705 - -
Ssu4g1452 711 SUPERFAMILY Protein kinase-like (PK-like) 428 687 IPR011009 -
Ssu4g1452 711 Gene3D Phosphorylase Kinase; domain 1 414 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1452 Ssu-Chr4 24184423 24187120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1452 1 691 Receptor kinase-like Gene Family AT5G06940 64.943 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu4g1452 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1452 - - gmx:100794428 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1452 4 24184423 24187120 Ssu4g1452 4 24184423 24187120 ECH