Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1447 ATGGAGCAAGTTCCGAGAGGATTGCGCGGATCCGTGCACGACGGCGCTACACTCGAGTCCATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCGCCGGAAAACGCCAGCTCGTTCACCGCGCTGCTCGAACTCCCGCCGATTCAGGCGGTGGAGCTCCTTCACTCGCCGGACTCCGACAACGCCGCCGCTCGGAAACCGCCTAATTGCCACGTCAGCGCGAATCAGAAACCCTTCCTGCTCAACTCTTTCGGTAGCAATTTGACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCGGCCAAGTTCTCCGTGTTCGCCGGCGAAAATTCGCCGCCGCAGGGGGAGGCGCGCGTGGTTCCGGCCGGGTCCGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCAACGCAGGGTTGCGCTTCGGATCCCGCGGTTGAGAACAAGAATCAGAGGACCGCGAAGAGAAAGGAGCGGGAGAAGAAGGTTAAAGGATCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGACCTCCGGGGACGGCGAGAAGCTTCCCTACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACAGACAGCCACAGCTTGGCAGAAAGAGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGTGACAAGATATCAGGAATGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCATCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTGCTGatGGGGCATCTCTAATGGACAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTTAATGGCAACCGACAGCATTATCAACAACAGTGGCAATTCGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGGTAGACCAGAATTTTAG 1077 0.5348 MEQVPRGLRGSVHDGATLESIQFNEEIQGIMAPAPENASSFTALLELPPIQAVELLHSPDSDNAAARKPPNCHVSANQKPFLLNSFGSNLTFPSNAALIERAAKFSVFAGENSPPQGEARVVPAGSGSNLDRVKNEPQETDSNPCSTQGCASDPAVENKNQRTAKRKEREKKVKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGMAMVLDEIINHVQSLQHQVEILSMKLAAVNPRIDFSLDSLLAADGASLMDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSGRPEF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1447 358 CDD bHLH_AtBPE_like 195 280 - -
Ssu4g1447 358 MobiDBLite consensus disorder prediction 139 158 - -
Ssu4g1447 358 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Ssu4g1447 358 Gene3D - 202 274 IPR036638 GO:0046983
Ssu4g1447 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 255 IPR011598 GO:0046983
Ssu4g1447 358 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 354 IPR024097 GO:0006355
Ssu4g1447 358 SMART finulus 211 261 IPR011598 GO:0046983
Ssu4g1447 358 MobiDBLite consensus disorder prediction 175 191 - -
Ssu4g1447 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 274 IPR036638 GO:0046983
Ssu4g1447 358 MobiDBLite consensus disorder prediction 111 191 - -
Ssu4g1447 358 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1447 Ssu-Chr4 24074552 24084088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1447 7 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.624 9.14e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1447 HLH 9.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1447 - - gmx:100795486 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1447 4 24074552 24084088 Ssu4g1447 4 24074552 24084088 ECH
Ssu4g1447 4 24074552 24084088 Ssu7g2775 7 57694030 57698771 PCT