Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1445 ATGTCGCGTCTTCACTGTTCCCCAACAATGCCAATGCCAATGCATCTCCTTCCCCTTTACATATCACTCCTTCTCTGTTTCGTGGCTCCTCGAACCAGCTCCCTCAACTCCGACGGCCTCTCCCTGCTGGCCCTGAAAGCCGCCGTGGACTCCGACCCCACCGGCCTCCTCACCTCCTGGTCGGAAACCGACGCGACCCCGTGTCGCTGGGCGGGCGTGTCCTGCATGGGCGACCAAGTCACCCAACTCGCCCTCCCAAACAAGAACCTCACCGGCTACATCCCCTCCGAGCTCGGCTTCCTCACCTCCCTCAGGAGACTAAGCCTCCCCCGCAACAACTTCTCCAACGCCATCCCCCCACCCCTCTTCAACGCCACCACCCTCACCGTCCTCGACCTCTCCCACAACTCCCTCTCCGGTTCCCTCCCCGCCGAGCTCCGCTCCCTCAGGTTCCTCCGCCACCTCGACCTCTCCTCCAACTCCCTCGACGGCCCCCTCCCCGAAACCCTCTCCGACCTCACCTCCCTCGCCGGAACGCTCAACCTCTCCTTCAACCGCTTCTCCGGCGGGATTCCGGCGTCCCTCGGAAACCTCCCGGTCTCCGTGAGCCTCGACCTCCGCAACAACAACCTCACCGGAAAAATCCCCCTGGTGGGGTCTCTGCTGAACCAGGGTCCCACCGCGTTTTCCGGCAACGATGGGCTCTGTGGTTTCCCGCTGCAAACCGCGTGCCCCGAGGCTCAGAGGCCCGGGGCTCTCGCGAACCCTGAAAACGATTACCCTCAGAACCCCAATGCGCTTCACCCTGACGACCCAGAAGGGAAGGTGAAGCAGCACGGCGGCGGCTCCGTCGCCGTTCTCGTTATCTCCGGGCTCTCCGTCGCGGTTGGGGCGGTGTCGCTGTCGCTGTGGGTTTTCCGGCGACGGCGCGGCGGCGAGGAGGGTAAATTGGGAGGGCAGAAATTGGAGAGTGAGGCGGATGGCGGAGAGGGGCAGGAGGGTAAATTCGTGGTGGTGGATGAAGGGTTTGAGTTGGAGCTGGAGGATTTGCTGAGGGCTTCTGCGTATGTTGTTGGGAAGAGCAGGAGTGGGATTGTGTACAAGGTTGTCGGTGTTGGGAAAGGGCCCTCCGCGGCGGGGACGGTGGTGGCTGTTCGGCGACTCAGCGAGGGGGATGCCACGTGGCTGTTTAAGGAGTTTGAGTCTGAAGTGGAGGCCGTTGCCAGGGTTCGTCACCCCAATGTTGTCCCTTTGAGGGCTTATTACTACGCGCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGCTTGCACACTGCGTTACATGGTATCAatcaaatctttgttttgtctttctttgttaaattaaattacccGTTATTAGTACCACTTCGATTAATTATCATATGA 1419 0.5913 MSRLHCSPTMPMPMHLLPLYISLLLCFVAPRTSSLNSDGLSLLALKAAVDSDPTGLLTSWSETDATPCRWAGVSCMGDQVTQLALPNKNLTGYIPSELGFLTSLRRLSLPRNNFSNAIPPPLFNATTLTVLDLSHNSLSGSLPAELRSLRFLRHLDLSSNSLDGPLPETLSDLTSLAGTLNLSFNRFSGGIPASLGNLPVSVSLDLRNNNLTGKIPLVGSLLNQGPTAFSGNDGLCGFPLQTACPEAQRPGALANPENDYPQNPNALHPDDPEGKVKQHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRRGGEEGKLGGQKLESEADGGEGQEGKFVVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGKGPSAAGTVVAVRRLSEGDATWLFKEFESEVEAVARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGINQIFVLSFFVKLNYPLLVPLRLIII 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1445 472 Gene3D Phosphorylase Kinase; domain 1 335 434 - -
Ssu4g1445 472 SUPERFAMILY L domain-like 38 241 - -
Ssu4g1445 472 Gene3D Ribonuclease Inhibitor 179 246 IPR032675 -
Ssu4g1445 472 SUPERFAMILY Protein kinase-like (PK-like) 357 448 IPR011009 -
Ssu4g1445 472 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 447 - -
Ssu4g1445 472 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Ssu4g1445 472 Gene3D Ribonuclease Inhibitor 35 178 IPR032675 -
Ssu4g1445 472 PRINTS Leucine-rich repeat signature 128 141 - -
Ssu4g1445 472 PRINTS Leucine-rich repeat signature 149 162 - -
Ssu4g1445 472 Pfam Protein tyrosine and serine/threonine kinase 358 446 IPR001245 GO:0004672|GO:0006468
Ssu4g1445 472 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 447 - -
Ssu4g1445 472 MobiDBLite consensus disorder prediction 248 279 - -
Ssu4g1445 472 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Ssu4g1445 472 ProSiteProfiles Protein kinase domain profile. 352 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1445 Ssu-Chr4 24022563 24023981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1445 10 446 Receptor kinase-like Gene Family AT2G42290 59.142 1.38e-171 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g1445 PK_Tyr_Ser-Thr 4.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1445 - - gmx:100796011 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1445 4 24022563 24023981 Ssu4g1445 4 24022563 24023981 ECH