Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1443 ATGGTTGCAGGTGGGCCTTCCAATCCATTGCCACCGTTGTCATGGGCAGCAAGGTTAAAAATTGCTCAAGAAGCAGCAAGGGGCTTGATGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACCTAAAGTCAACAAAAATCTTACTGGATGATGAGCTCCATCCATATGTGTCAGGTTTTGGACTTACTCGTCTTGGTTTGGGCCTGTCAAAGTCTACTACAATGGCAACAAAACGGAACAACTTGAACCAATCTACTATAACCTCTGCAATGAGTACAAAGGTTGCCGCTTCCTTTAACCACTACTTGGCACCTGAGGTGCGCATGGCTGGTGGCAAGTTCACTCAGAAATGTGATgtatattcttttggtatagtgctGTTAGAACTTTTGACGGGCAGGATGCCAGATTTTGGGCCAGAAAATAATGATAAGGTGCTAGAGAGTTTTGTAAGGAAAGCGTTCAGGGAGCAGCAGCCACTGTCTGATATCATAGACCCAGCACTTCTGCCGGAGGTTTATGCTAAAAAGCAAGTCATTGTTGCATTCCATATTGCTCTGAACTGCACTGAACTCGATCCAGAATTGCGACCTAGAATGAAAACCGTGTCAGAGAGCCTTGATCGCATCAAAATACAGTGA 651 0.4347 MVAGGPSNPLPPLSWAARLKIAQEAARGLMYIHEFSGRKYIHGNLKSTKILLDDELHPYVSGFGLTRLGLGLSKSTTMATKRNNLNQSTITSAMSTKVAASFNHYLAPEVRMAGGKFTQKCDVYSFGIVLLELLTGRMPDFGPENNDKVLESFVRKAFREQQPLSDIIDPALLPEVYAKKQVIVAFHIALNCTELDPELRPRMKTVSESLDRIKIQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1443 216 SUPERFAMILY Protein kinase-like (PK-like) 12 210 IPR011009 -
Ssu4g1443 216 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 216 - -
Ssu4g1443 216 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 216 - -
Ssu4g1443 216 Gene3D Transferase(Phosphotransferase) domain 1 7 216 - -
Ssu4g1443 216 SMART tyrkin_6 1 210 IPR020635 GO:0004713|GO:0006468
Ssu4g1443 216 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1443 216 Pfam Protein tyrosine and serine/threonine kinase 12 209 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1443 Ssu-Chr4 24020586 24021236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1443 4 214 Receptor kinase-like Gene Family AT3G57830 60.748 1.06e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g1443 PK_Tyr_Ser-Thr 4.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1443 - - gmx:100796011 387.882