Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1442 atggattcGAATTCCCGTTACCAAGTCCACCAGCAGCAGCACCAACCCAATTCTGGGTTACTTCGCTTTCGCTCTGCCCCTACGCCAGTTCTCGCGAATTTCAAACAAGGCGAAGCTGCCAATAATGGGAACCCCTGGGAGGGTACGGAACCCGCTTTGAGATTCTTGAATTCCGGGGACAGCCACGATACGACGTCGCCTAGCTTACGAGAATTCGTGGATAATAAGGCTTCTAAGGagtcatcaatatcatcacctcTGAGTCGCATGAATTCTTCCCAACAACACGGTTATAGTACTTCTGCGTTACCCTCTCGCTATTCGAGGCATGACTCTAGTGTAACTTCAGCTATGATGGTGGGTTCTGTTAATTCCAATCTTCTCAGGCAGAGTAGCTTCCCTGCTGGCCATTTCTCTAACAACATATCCTTTCAGAACGGGTATGATACTATGAAAGGTGTTGGAAACTATGGTGGGGTTAATGGCAATGATGGTGAACCTAGTCTATCTATGAACAGaatgaagaatcaaattaacTTCTCATCAAGGAGTCCTTCTTCCTTGGGAATGTTATCACAAACCTCCAAAATGGGCAGTGAGGGACTTAGGGTAACTAGTCCTGAGGATGGGAGACAAGGAGGTAGCGATGGTGATGCTCGATACTATGGATTCCCTTGTGCTTCTTGGAATGAGACGTCACACCTGAAAAGACCGCGAAATAGTAGTGATGATGAGTTACTTTCTGATGCTCCGAATGGAGAGCTGGGAAATCAAGTTCATACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGAGATGTTTGCTATGGATAATTTGTTTCAGTTCACGGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACACGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGAGTACATAAAAAATCTTCAGAAACAATTCAAGACTCTGAGCGAAAGACGGGCTAAATGCCAATGTATAAACATGCAGAAGTCAGAAACAGATCAAATTGCTTGA 1131 0.4341 MDSNSRYQVHQQQHQPNSGLLRFRSAPTPVLANFKQGEAANNGNPWEGTEPALRFLNSGDSHDTTSPSLREFVDNKASKESSISSPLSRMNSSQQHGYSTSALPSRYSRHDSSVTSAMMVGSVNSNLLRQSSFPAGHFSNNISFQNGYDTMKGVGNYGGVNGNDGEPSLSMNRMKNQINFSSRSPSSLGMLSQTSKMGSEGLRVTSPEDGRQGGSDGDARYYGFPCASWNETSHLKRPRNSSDDELLSDAPNGELGNQVHTLSHHLSLPRTSSEMFAMDNLFQFTDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVEYIKNLQKQFKTLSERRAKCQCINMQKSETDQIA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1442 376 Gene3D - 300 373 IPR036638 GO:0046983
Ssu4g1442 376 MobiDBLite consensus disorder prediction 232 257 - -
Ssu4g1442 376 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 368 - -
Ssu4g1442 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 365 IPR036638 GO:0046983
Ssu4g1442 376 MobiDBLite consensus disorder prediction 180 201 - -
Ssu4g1442 376 CDD bHLH_AtbHLH_like 303 356 IPR045239 -
Ssu4g1442 376 Coils Coil 311 331 - -
Ssu4g1442 376 MobiDBLite consensus disorder prediction 1 109 - -
Ssu4g1442 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 298 348 IPR011598 GO:0046983
Ssu4g1442 376 MobiDBLite consensus disorder prediction 78 109 - -
Ssu4g1442 376 PANTHER TRANSCRIPTION FACTOR BHLH130 12 368 - -
Ssu4g1442 376 Pfam Helix-loop-helix DNA-binding domain 304 349 IPR011598 GO:0046983
Ssu4g1442 376 MobiDBLite consensus disorder prediction 180 217 - -
Ssu4g1442 376 SMART finulus 304 354 IPR011598 GO:0046983
Ssu4g1442 376 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1442 Ssu-Chr4 23982627 23984774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1442 1 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.667 5.05e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1442 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1442 - - gmx:100814652 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1442 4 23982627 23984774 Ssu4g1442 4 23982627 23984774 ECH
Ssu4g1442 4 23982627 23984774 Ssu8g0401 8 6407954 6410087 ECH
Ssu4g1442 4 23982627 23984774 Ssu3g2709 3 81052174 81056012 ECH
Ssu4g1442 4 23982627 23984774 Ssu7g2771 7 57418448 57421741 PCT