Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1440 ATGGATGCTGCTGGCGCTACTGTTTTGTGTTACATCTTCATCTCCTCCATAGCTTTCCTTATTTTCACTTCAGTTTTCAAGTCCCTTATCATACGAAGCACAAATAGCAGCAGCAGACTTCGACCCCCACCAAGTCCACCAGCACTCCCCATCATCGGCCACCTCCACCTTCTAGGCTCAGTCATGCCAAAATCATTCCAAGCCCTGGGTCGCCTCTATGGCCCTCTCATTCAGCTCCGTTTGGGTGCCTCAACATGCGTAGTTGTCTCCAACGCCCAGGTTGCCAAACAAGTGATGAAAACCCATGACCTCAATTTCTGTTACCGACCCCAGTTTGGATCCTCCGATTACTTCTTATACAAAGGGTCTTATTTCATCACTGCCCCGTATGGCCCTTACTGGCGCTTCATGAAGAAGCTTTGCGTGACTCAACTGCTCTCGAGCTCACAGCTCGGGCGCTTCATGCACATCCGGGAGCAGGAGATAAAGAAGCTCTTGAAATCTCTGGTGGTGTGTTCCGCTGAGGGCAGGGCCACGGATTTGAGCTTTGAGCTCACTGCTTTGACCAACAATATCCTGTGTCGGATGGCCATGAGCACTAGTTGTTTGGACAAGGTTAATGATGCCGAGGAGATTCTTGGCTTGGTTCGGGAGCTTTTGCACGTGGGAGCTAAATTGAGCATGGGGGAGGTGTTGGGGCCTCTGGGGAAGTTGGACTTGTTTGGGTATGGGAAAAAGCTTGTGAAAATAGTTGACAAATTTGATCAGGTTTTGGAGCGCATCTTGGAGGAACATGAAGAGAGAAACACCGAGGCTTCTGGGGGAGTAACAGGGGACATGATGGATATTCTATTACAAGTTTATAAAGATCCAAATGCTGAAGTGAGGTTAACAAGGAATGATATCAAGGCCTTCTTCCTAGATATTTTCCTTGCGGGAACAGACACGTCTTCTGCAGCGTTGCAATGGGCCATGACGGAGATCATGAACAACCCGGGAGTGTTAAAGAAGCTGAGGGCAGAGATTGATGCAGTGGTGGGGACTAGCAGGTTGGTTAGCGAATCAGACGTTCCAAATCTACGGTATCTCCAAGCTGCTGTGAAGGAAGTGCTGAGACTCCATCCAACGGCACCCTTTGCTCTTAGACAATCAGCAGAGGACTGCAGCATCAACGGCTATGATATAAAGGGCCAGACACGGACACTGATCAATGTCTACGCCATCATGCGGGACCCAGAAGCGTGGGTCAACGCAGAGGAGTTTATACCAGAGAGGTTCACTGATGGAGCTGAACGTATGAATACGATTACAATGGACGGTGGTGATTTCAGGTATCTTCCATTTGGGTTTGGTAGGAGGGGGTGTCCTGGATCTTCCCTTGCCTTAACGGTCATACAAGTGACAGTTGCGTCGCTGATCCAATGCTTTGAATGGAAAATCAAAGGGGGAGAGAGGGTTAGTATGGAAGAAGGGCCATCGTTTTCTGCAGGATTGGCAAAGCCGCTTGTTTGTTACCCTGTCACTTGTTTTAATCCTTTCTAA 1542 0.489 MDAAGATVLCYIFISSIAFLIFTSVFKSLIIRSTNSSSRLRPPPSPPALPIIGHLHLLGSVMPKSFQALGRLYGPLIQLRLGASTCVVVSNAQVAKQVMKTHDLNFCYRPQFGSSDYFLYKGSYFITAPYGPYWRFMKKLCVTQLLSSSQLGRFMHIREQEIKKLLKSLVVCSAEGRATDLSFELTALTNNILCRMAMSTSCLDKVNDAEEILGLVRELLHVGAKLSMGEVLGPLGKLDLFGYGKKLVKIVDKFDQVLERILEEHEERNTEASGGVTGDMMDILLQVYKDPNAEVRLTRNDIKAFFLDIFLAGTDTSSAALQWAMTEIMNNPGVLKKLRAEIDAVVGTSRLVSESDVPNLRYLQAAVKEVLRLHPTAPFALRQSAEDCSINGYDIKGQTRTLINVYAIMRDPEAWVNAEEFIPERFTDGAERMNTITMDGGDFRYLPFGFGRRGCPGSSLALTVIQVTVASLIQCFEWKIKGGERVSMEEGPSFSAGLAKPLVCYPVTCFNPF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1440 513 Gene3D Cytochrome P450 29 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 513 - -
Ssu4g1440 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Ssu4g1440 513 PANTHER CYTOCHROME P450, FAMILY 712, SUBFAMILY A, POLYPEPTIDE 1 6 513 - -
Ssu4g1440 513 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 SUPERFAMILY Cytochrome P450 37 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1440 513 Pfam Cytochrome P450 43 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1440 Ssu-Chr4 23935600 23937462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1440 12 513 Cytochrome P450 AT2G42250 52.079 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1440 - - gmx:106794180 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1440 4 23935600 23937462 Ssu4g1440 4 23935600 23937462 ECH
Ssu7g2768 7 57349288 57352465 Ssu4g1440 4 23935600 23937462 PCT