Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1439 atggcTGACTACCAAGGCTACATCCTACTTTTCATCGCATGGTTAGTCTCCACAATCGTGGTTCGAGCCATACTCAGcagaaaacaaaacaagactGATCGACCACCACGTCCACTAGCCTTACCCATCATTGGACATCTCCACCTTCTTGCTCCAATACCTCACCAGGCTCTTCACAAGCTCTCTACCCGTTATGGACCCATAATGCACCTTCTCCTTGGTTCTGTACCTTGTGTCGTAGCTTCCACTCCAGAAGCTGCCAGAGAATTCCTCAAAACTCACGAAACCCGTTTCTCCAACCGCCCGCAAAGTTCTGCAGTTGATTATCTAACATATGGCTCCCAGGACTTCTCCTTCGCGCCGTATGGACCTTATTGGAAATTCATGAAGAAAATATGCATGTCTGAACTTCTGGGGGGTCACACGCTAAGTCAGCTTCTTCCTGTGAGAAGACAAGAGACGTTAAGGTTTCTGAGACTTCTGCTCCAGAAAGGGAAGGCAGGTGAGGCCGTCGATGTTGGGGGAGAACTATTGACACTGTCGAATAACGTTGTGTCGAGGATGATCATGAGCCAAACGTGTTCTGAAAATGATCGTGAAGCCGAAGAGGTGAGGAAGTTGGTGCAAGACACTGTACTTCTGACGGGGAAGTTTAATGTGTCGGACTTCATTTGGTTCTTTAGGAACTGGGATTTGCAGGGGTTCGGGAAAAGACTCAAGGAAATTCGGGACAGGTTTGACACCATGATGGAGAGGGCGATCAAGGAGCATGAAGAGGAAAGGAGGAAGAGAGAGGAACTGGGAAGTGGAGGAGAGGGTCAAATCAAGGATCTGCTTGATATATTATTGGACATACATGAAGATGAGAACTCTGACATAAAATTGACAATAGAGAACATAAAGGCCTTCATCTTTGATATATTTATGGCAGGAACAGACAGTTCAGCCTTAACAACCGAATGGGCTCTGGCCGAGTTGATTAACCACCCACATGTGATGGAGAGAACAAGACAAGAGATTGATGCTGTGATTGGAAATAGTAGAGTAGTAGAAGAATCAGACCTTGTCAACCTTTCTTACCTGCAAGCTGTTGTCAAGGAAACGCTGAGGATTCACCCCACAGGTCCATTAATTGTTAGAGAATCATCTGAAAGCTGCACTATCTGGGGCTATGAGATTCCAGCAAAGACTCAGTTGTTTGTTAATGTGTGGGCTATTGGCCGGGACCCCAATCACTGGGAGAACCCACTTGAGTTCAGACCAGAGAGGTTTATAAGTGAAGAGGAAAGTGGGAAGAGCCAGTTAGATGTTAGGGGACAACATTTTCACCTGATTCCATTTGGGAGTGGAAGAAGAGGGTGTCCTGGAACCTCACTAGCTTTGCAGGTTGTGCAGACCAACCTTGCTGCAATGATTCAGTGTTTTGAATGGAAGGTTAAAGGAGGCATTGACACTGTTGACATGGAAGAGAAACCCGGGATAACTCTTTCAAGGGCTCATCCATTGATTTGTGTCCCAGTGCCTAGGCTTAATCCTTTTCCTCCCATGTGA 1551 0.4578 MADYQGYILLFIAWLVSTIVVRAILSRKQNKTDRPPRPLALPIIGHLHLLAPIPHQALHKLSTRYGPIMHLLLGSVPCVVASTPEAAREFLKTHETRFSNRPQSSAVDYLTYGSQDFSFAPYGPYWKFMKKICMSELLGGHTLSQLLPVRRQETLRFLRLLLQKGKAGEAVDVGGELLTLSNNVVSRMIMSQTCSENDREAEEVRKLVQDTVLLTGKFNVSDFIWFFRNWDLQGFGKRLKEIRDRFDTMMERAIKEHEEERRKREELGSGGEGQIKDLLDILLDIHEDENSDIKLTIENIKAFIFDIFMAGTDSSALTTEWALAELINHPHVMERTRQEIDAVIGNSRVVEESDLVNLSYLQAVVKETLRIHPTGPLIVRESSESCTIWGYEIPAKTQLFVNVWAIGRDPNHWENPLEFRPERFISEEESGKSQLDVRGQHFHLIPFGSGRRGCPGTSLALQVVQTNLAAMIQCFEWKVKGGIDTVDMEEKPGITLSRAHPLICVPVPRLNPFPPM 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1439 516 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 514 - -
Ssu4g1439 516 Pfam Cytochrome P450 35 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Ssu4g1439 516 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PANTHER CYTOCHROME P450 FAMILY PROTEIN 4 514 - -
Ssu4g1439 516 SUPERFAMILY Cytochrome P450 35 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 Gene3D Cytochrome P450 19 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1439 516 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1439 Ssu-Chr4 23932260 23934225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1439 1 509 Cytochrome P450 AT5G06900 51.272 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1439 K24188 - gmx:100779342 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1439 4 23932260 23934225 Ssu4g1439 4 23932260 23934225 ECH
Ssu4g1439 4 23932260 23934225 Ssu7g2769 7 57393594 57395461 PCT
Ssu7g2766 7 57340896 57343472 Ssu4g1439 4 23932260 23934225 PCT