Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1438 ATGGCTTTTCAAGTCTTGCTCATTTGTTTGGTCTCCACCATCGTGCTTGGATCCATAATatggagaaaacaaaacaagacCCTCCTTCCACCGAGTCCCATAGCCCTACCCATCATTGGCCACCTCCACCTTCTCTCCCCAACACCTCACCAAGATTTTCACAAACTCTCAATCCGCTATGGACCCATAATACACCTTTTCCTCGGCTCAGTCCCTTGTGTTGTAGCTTCCACCGCAGAAGCTGCCAAAGAGTTCCTCAAAACTCACGAAACCTCCTTCTCCAACCGCCCTGCTCAAACCGTTGCCGTTGAGGCCTTAACCTACGGCTTCCAAGACTTCTTGTTCGCACCTTACGGACCCTATTGGAAGTTCATGAAGAAACTGTGCATGTCTGAACTTCTCGGTGGCCACATGCTGGACCAGTTCCTTCCCCTGAGGCAGCAAGAGACAAAGAGATTTGTCAAACGCGTGCTCCAGAAAGGGATCGCTGGTGAGGCCGTGGATTTTGGAGGAGAGTTTTTGACGCTCTCGAATAACATCGTGTCGAGAATGACCGTGAGTCGGACTAGTTCTGAGAACGAGGACGAAGACGAAGAGATGAGGAAGCTGGTGGCGGATACGGCAGAGCTCGTGGGGAAGTTCAACATATCGGACTTCATTTGGTTCTTGAAGAGTTTCGATTTGCAGGGATTCAACAAGAGGCTGAGGCAAATTCGGGACAGGTTTGACACCGTCATGGACAGAATCATAAAGGAGCGGGAAGAGGAAAGAAGGAACAACAAGGAAACGGGTGGAACACGTCAATTTAAGGATATGCTAGATGTTTTATTGGATATATTTGAAGATGAGAATTCTGAAGTGAAATTGGACAAAGAAAACATTAAGGCCTTCATCATGGACATATTTGTTGCTGGGACTGACACGTCAGCTGTAACCATGGAATGGGCTATGGCAGAGTTAATCAACAATCCACGTGTGTTGAAGAAGGCAAAGCAAGAGATGGATGCAGTGGTTGGAAAGAGTAGAATTGTTGAAGAATCAGATATTGTCAACCTTCCTTACCTGCAAGCCATTGTTAGAGAAACATTAAGGGTTCACCCAGCAGGTCCGTTGATTTTTAGGGAGTCATCAAGAAGAGCTGTGGTTTGTGGTTATGATATTCCAGCCAAGACTCGATTATTTATCAATGTTTGGGCTATTGGTAGGGACCCCAATCACTGGGAGAACCCACTTGAGTTCAGGCCAGAGAGGTTTATTGGGAATGGGCAGGGTCAATTGGATGTCAGGGGACAGCATTATCATCTAATTCCGTTCGGGAGTGGAAGAAGAGGGTGCCCTGGTACTTCTCTGGCGTTGCAGGTTGTGCATGTGAATCTGGCTGCTATGATTCAGTGTTTCCAATGGAAGGTTGATGGTGGCAATGGCAAGGTGGACATGGAAGAGAAGTCTGGCATCACTCTTCCGAGGGCTCACCCCATAATATGTGTCCCTGTTCCAAGGATTAACCCATTCCCTGCTATgtga 1524 0.4678 MAFQVLLICLVSTIVLGSIIWRKQNKTLLPPSPIALPIIGHLHLLSPTPHQDFHKLSIRYGPIIHLFLGSVPCVVASTAEAAKEFLKTHETSFSNRPAQTVAVEALTYGFQDFLFAPYGPYWKFMKKLCMSELLGGHMLDQFLPLRQQETKRFVKRVLQKGIAGEAVDFGGEFLTLSNNIVSRMTVSRTSSENEDEDEEMRKLVADTAELVGKFNISDFIWFLKSFDLQGFNKRLRQIRDRFDTVMDRIIKEREEERRNNKETGGTRQFKDMLDVLLDIFEDENSEVKLDKENIKAFIMDIFVAGTDTSAVTMEWAMAELINNPRVLKKAKQEMDAVVGKSRIVEESDIVNLPYLQAIVRETLRVHPAGPLIFRESSRRAVVCGYDIPAKTRLFINVWAIGRDPNHWENPLEFRPERFIGNGQGQLDVRGQHYHLIPFGSGRRGCPGTSLALQVVHVNLAAMIQCFQWKVDGGNGKVDMEEKSGITLPRAHPIICVPVPRINPFPAM 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1438 507 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 Pfam Cytochrome P450 30 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Ssu4g1438 507 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 505 - -
Ssu4g1438 507 Gene3D Cytochrome P450 21 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1438 507 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 505 - -
Ssu4g1438 507 SUPERFAMILY Cytochrome P450 30 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1438 Ssu-Chr4 23929736 23931553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1438 5 500 Cytochrome P450 AT5G06900 50.602 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1438 K24188 - gmx:100815706 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1438 4 23929736 23931553 Ssu4g1438 4 23929736 23931553 ECH
Ssu4g1438 4 23929736 23931553 Ssu7g2766 7 57340896 57343472 PCT