Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1432 ATGGCTTCCAAGACCACCAACGCAACAACAACTACTCAATTGGAACCACTCCCACCACCTCAACAACgtaatcctcatcatcatcagttacaacatcatcatcaaatacATGACCATCAAATTTCTTTTGGAATGATGcaatcttcttcttcatcttcctctATCCCCGGGAACTTCCTAAGCAAGGATTCGGGAGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCGAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCGTCTAAGCCTATGCACGTCGAGCCATCATCATCCAAGTCCAAGgCTAACATAGAGCTAGTTTCTCCGCAAACAAGTGGATCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTTTGCCCCTCAACTACCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAAGGTCTAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTTAGGAAAAAGgCATATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTTAATCAGCTGGAACAAGAGCTACAGCGTGCTAGAGCTCAAGGCATATTCTTCGGTGGAGGTGCACTTTTGGGAGGAGAGCAAGGCCTCCCTGTCTCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTAGAGTATGCTAGATGGCTAGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCCGAGAACGAGCTTAGACTGTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCTTAGTGGCCAAAACAGACGTGTTCCATCTTGTTTCTGGCATATGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGATTCAGGCCATCCGAACTCATTAAgATTATTCTGAGTCAAATTCAACCTCTCACGGAGCAACAAATATTGGGTATATGTGGATTGCAACAATCTACGCAAGAGGCAGAAGAGGCTCTCTCCCAAGGGCTCGAGGCTCTTAATCAATCTCTCTCAGACACTATAACATCAGACCACTTGACCTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCCGTGGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCAGATAGTCTGCGGCACCAAACCATTCACCGTCTGCATCAGATCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATTGCCGAGTACTTCAATCGTCTGCGAGCCCTGAGTTCGTTGTGGTTGACACGCCCTCGCCCAGATTAG 1437 0.46 MASKTTNATTTTQLEPLPPPQQRNPHHHQLQHHHQIHDHQISFGMMQSSSSSSSIPGNFLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEAAFAPQLPKAVKRESNRKGLTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARAQGIFFGGGALLGGEQGLPVSMNTISSEAAMFDVEYARWLEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGIWKTPAERCFMWIGGFRPSELIKIILSQIQPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDHLTYPPNMANYMGQMAVAMNKLSTLEGFVRQADSLRHQTIHRLHQILTTRQAARCFLAIAEYFNRLRALSSLWLTRPRPD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1432 478 ProSiteProfiles DOG1 domain profile. 260 474 IPR025422 GO:0006351|GO:0043565
Ssu4g1432 478 Pfam Seed dormancy control 278 352 IPR025422 GO:0006351|GO:0043565
Ssu4g1432 478 MobiDBLite consensus disorder prediction 85 190 - -
Ssu4g1432 478 MobiDBLite consensus disorder prediction 85 104 - -
Ssu4g1432 478 SUPERFAMILY Leucine zipper domain 187 229 IPR046347 GO:0003700|GO:0006355
Ssu4g1432 478 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 77 476 - -
Ssu4g1432 478 Pfam bZIP transcription factor 187 220 IPR004827 GO:0003700|GO:0006355
Ssu4g1432 478 PANTHER TRANSCRIPTION FACTOR TGA9 77 476 - -
Ssu4g1432 478 Coils Coil 206 233 - -
Ssu4g1432 478 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Ssu4g1432 478 MobiDBLite consensus disorder prediction 1 36 - -
Ssu4g1432 478 Gene3D - 186 235 - -
Ssu4g1432 478 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Ssu4g1432 478 SMART brlzneu 183 256 IPR004827 GO:0003700|GO:0006355
Ssu4g1432 478 MobiDBLite consensus disorder prediction 113 141 - -
Ssu4g1432 478 CDD bZIP_HBP1b-like 187 236 - -
Ssu4g1432 478 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g1432 478 MobiDBLite consensus disorder prediction 163 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1432 Ssu-Chr4 23869164 23875700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1432 57 478 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.914 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g1432 DOG1 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1432 K14431 - gmx:100815176 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1432 4 23869164 23875700 Ssu4g1432 4 23869164 23875700 ECH
Ssu4g1432 4 23869164 23875700 Ssu7g2763 7 57253073 57260818 PCT