Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1427 ATGAGTCTCCAAAGCAACTTCCTATCTCTTTTGGTTCCCCTGGCCGCAGTTTTTGTATCTTTGTATCTCATAAATCCAATTCCACTGTTTCTCAACAGCTTCACATATTTTAGTCTCACAACCTTGTCACCATCATCTGTATACTTGGCAAAACCTTTAACATGGAAATGGAACTTCCACAGACACCATCATCATCGACCACACAAGAAACACCCTGACAGCGGCAATACCGATTctatttgtgatgattttcCACCAGGAATTCCACCTCCAAATACCAATACCACTTCGTATCTTTGTGTTGATGGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGCAAAAAGAACCATAATATGGATAAACAGTGGCATCTACTATGAGAAGGTTTTCGTTCCCAAAACCAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACTGCAATTGCATGGAATGACACCGCATTGTCCGCGAATGGAACATTTTATAGTGGCTCTGTACAAGTTTTCGCCTCCAACTTCATTGCTAAGAACATAAGCTTCATgAATTTAGCACCAATCCCAAGTCCTGGGGCCGTAGGGGCACAAGCAGTAGCTATTAGAGTATCGGGAGATCAATCTGAATTTAGGGGTTGTGGATTCTTCGGAGCCCAAGACACCCTTCACGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATCCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGATCACTCTATGAGAATTGTCAAATAGTTTCTATAGCCAACCCCGTACCCGCGGGACAAAGGAGCATAAATGGTGCTGTTACAGCCCATGGTAGAGTTTCCATGGATGAAAATACAGGCTTTGCATTTGTGAACAGTGCAATAGGGGGAAACGGAAGAATATGGTTGGGTCGGGCATGGAGACCTTATTCTCGCGTTGTTTTTGCCTTCACAACAATGTCAGATATCATTGCCCCCGAAGGTTGGAATGATTTCAACGACCCTTCAAGAGATCAGACTATCTTCTATGGAGAATACAATTGCTCGGGGCCAGGGGCTAATACGAACTTCAGGGCACCTTATGTACAGAAATTAAGTGAAACACAAGCTTTGGCATTCCTCAACACAAGTTTTATTGATGGCGACCAATGGTTGGAAACTTCCAAATAA 1203 0.4214 MSLQSNFLSLLVPLAAVFVSLYLINPIPLFLNSFTYFSLTTLSPSSVYLAKPLTWKWNFHRHHHHRPHKKHPDSGNTDSICDDFPPGIPPPNTNTTSYLCVDGKGCCNFTTVQAAVNAVPDFSAKRTIIWINSGIYYEKVFVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPIPSPGAVGAQAVAIRVSGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQIVSIANPVPAGQRSINGAVTAHGRVSMDENTGFAFVNSAIGGNGRIWLGRAWRPYSRVVFAFTTMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANTNFRAPYVQKLSETQALAFLNTSFIDGDQWLETSK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1427 400 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 12 398 - -
Ssu4g1427 400 Gene3D - 92 400 IPR012334 -
Ssu4g1427 400 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Ssu4g1427 400 SUPERFAMILY Pectin lyase-like 98 397 IPR011050 -
Ssu4g1427 400 Pfam Pectinesterase 101 393 IPR000070 GO:0030599|GO:0042545
Ssu4g1427 400 MobiDBLite consensus disorder prediction 66 86 - -
Ssu4g1427 400 PANTHER PECTINESTERASE 8-RELATED 12 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1427 Ssu-Chr4 23761846 23764985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1427 70 399 Carbohydrate Esterase AT1G05310 73.636 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1427 - - gmx:100806629 743.421